@@ -17,7 +17,7 @@ This SOP describes the analysis pipeline of downstream analysis of ChIP-seq sequ
toppeak - The number of top peaks used for motif analysis. Default is all
design - This file contains the experiment design information. CSV format
The following columns are necessary, must be named as in template and can be in any order:
The following columns are necessary, must be named as in template. An design file template can be downloaded [HERE](https://git.biohpc.swmed.edu/bchen4/chipseq_analysis/raw/master/docs/design_example.csv)
SampleID
The id of the sample. This will be the header in output files, please make sure it is concise
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@@ -41,8 +41,6 @@ This SOP describes the analysis pipeline of downstream analysis of ChIP-seq sequ
The peak caller used
### Test Data
### Credits
This example worklow is derived from original scripts kindly contributed by the Bioinformatic Core Facility (BICF), Department of Bioinformatics
