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Commit fbec8738 authored by Venkat Malladi's avatar Venkat Malladi
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Shorten and update file names.

parent 7db1f905
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1 merge request!20Resolve "Use SampleIds/ Experiment Id as file names throughtout pipeline"
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workflow/scripts/pool_and_psuedoreplicate.py
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...@@ -273,7 +273,7 @@ def main(): ...@@ -273,7 +273,7 @@ def main():
pool_pseudoreplicates_dict = {} pool_pseudoreplicates_dict = {}
for index, row in pseudoreplicates_df.iterrows(): for index, row in pseudoreplicates_df.iterrows():
replicate_id = index + 1 replicate_id = index + 1
pr_filename = experiment_id + ".pr" + str(replicate_id) + '.bedse.gz' pr_filename = experiment_id + ".pr" + str(replicate_id) + '.tagAlign.gz'
pool_replicate = pool(row, pr_filename, False) pool_replicate = pool(row, pr_filename, False)
pool_pseudoreplicates_dict[replicate_id] = pool_replicate pool_pseudoreplicates_dict[replicate_id] = pool_replicate
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