Commit fa258f22 authored by Venkat Malladi's avatar Venkat Malladi

remove work directory.

parent ba0e0850
Pipeline #6412 failed with stages
in 172 minutes and 21 seconds
...@@ -41,8 +41,7 @@ single_end_mouse: ...@@ -41,8 +41,7 @@ single_end_mouse:
- nextflow run workflow/main.nf --astrocyte true - nextflow run workflow/main.nf --astrocyte true
- pytest -m singleend - pytest -m singleend
after_script: after_script:
when: on_success - rm -rf work/
- rm -rf work/
paired_end_human: paired_end_human:
stage: single stage: single
...@@ -54,8 +53,7 @@ paired_end_human: ...@@ -54,8 +53,7 @@ paired_end_human:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true --astrocyte false - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true --astrocyte false
- pytest -m pairedend - pytest -m pairedend
after_script: after_script:
when: on_success - rm -rf work/
- rm -rf work/
single_end_single_control: single_end_single_control:
stage: single stage: single
...@@ -67,8 +65,7 @@ single_end_single_control: ...@@ -67,8 +65,7 @@ single_end_single_control:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_single_contol_SE.txt" --genome 'GRCh38' --pairedEnd false --astrocyte false - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_single_contol_SE.txt" --genome 'GRCh38' --pairedEnd false --astrocyte false
- pytest -m singlecontrol - pytest -m singlecontrol
after_script: after_script:
when: on_success - rm -rf work/
- rm -rf work/
single_end_diff: single_end_diff:
stage: multiple stage: multiple
...@@ -81,8 +78,7 @@ single_end_diff: ...@@ -81,8 +78,7 @@ single_end_diff:
- pytest -m singleend - pytest -m singleend
- pytest -m singlediff - pytest -m singlediff
after_script: after_script:
when: on_success - rm -rf work/
- rm -rf work/
paired_end_diff: paired_end_diff:
only: only:
...@@ -93,8 +89,7 @@ paired_end_diff: ...@@ -93,8 +89,7 @@ paired_end_diff:
- pytest -m pairedend - pytest -m pairedend
- pytest -m paireddiff - pytest -m paireddiff
after_script: after_script:
when: on_success - rm -rf work/
- rm -rf work/
single_end_skip: single_end_skip:
stage: skip stage: skip
...@@ -104,8 +99,7 @@ single_end_skip: ...@@ -104,8 +99,7 @@ single_end_skip:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --skipDiff true --skipMotif true --skipPlotProfile true --astrocyte false - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --skipDiff true --skipMotif true --skipPlotProfile true --astrocyte false
- pytest -m singleskip_true - pytest -m singleskip_true
after_script: after_script:
when: on_success - rm -rf work/
- rm -rf work/
cleanup_job: cleanup_job:
......
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