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chipseq_analysis
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BICF
Astrocyte
chipseq_analysis
Commits
fa258f22
Commit
fa258f22
authored
4 years ago
by
Venkat Malladi
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remove work directory.
parent
ba0e0850
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1 merge request
!68
Ci merge test
Pipeline
#6412
failed with stages
in 2 hours, 52 minutes, and 21 seconds
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.gitlab-ci.yml
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-12
6 additions, 12 deletions
.gitlab-ci.yml
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6 additions
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12 deletions
.gitlab-ci.yml
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6
−
12
View file @
fa258f22
...
...
@@ -41,8 +41,7 @@ single_end_mouse:
-
nextflow run workflow/main.nf --astrocyte
true
-
pytest -m singleend
after_script
:
when
:
on_success
- rm -rf work/
-
rm -rf work/
paired_end_human
:
stage
:
single
...
...
@@ -54,8 +53,7 @@ paired_end_human:
-
nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd
true
--astrocyte
false
-
pytest -m pairedend
after_script
:
when
:
on_success
- rm -rf work/
-
rm -rf work/
single_end_single_control
:
stage
:
single
...
...
@@ -67,8 +65,7 @@ single_end_single_control:
-
nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_single_contol_SE.txt" --genome 'GRCh38' --pairedEnd
false
--astrocyte
false
-
pytest -m singlecontrol
after_script
:
when
:
on_success
- rm -rf work/
-
rm -rf work/
single_end_diff
:
stage
:
multiple
...
...
@@ -81,8 +78,7 @@ single_end_diff:
-
pytest -m singleend
-
pytest -m singlediff
after_script
:
when
:
on_success
- rm -rf work/
-
rm -rf work/
paired_end_diff
:
only
:
...
...
@@ -93,8 +89,7 @@ paired_end_diff:
-
pytest -m pairedend
-
pytest -m paireddiff
after_script
:
when
:
on_success
- rm -rf work/
-
rm -rf work/
single_end_skip
:
stage
:
skip
...
...
@@ -104,8 +99,7 @@ single_end_skip:
-
nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --skipDiff
true
--skipMotif
true
--skipPlotProfile
true
--astrocyte
false
-
pytest -m singleskip_true
after_script
:
when
:
on_success
- rm -rf work/
-
rm -rf work/
cleanup_job
:
...
...
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