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Commit cf75becc authored by Venkat Malladi's avatar Venkat Malladi
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Fix paired end issu.e

parent 3a5fbf2c
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...@@ -126,7 +126,7 @@ process alignReads { ...@@ -126,7 +126,7 @@ process alignReads {
if (pairedEnd) { if (pairedEnd) {
""" """
python3 $baseDir/scripts/map_reads.py -f $reads -r ${index}/genome.fa -p python3 $baseDir/scripts/map_reads.py -f ${reads[0]} ${reads[1]} -r ${index}/genome.fa -p
""" """
} }
else { else {
......
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