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Commit c64e9f39 authored by Venkat Malladi's avatar Venkat Malladi
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Fix varaible name.

parent 60ff5559
1 merge request!8Resolve "Update deeptools"
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...@@ -167,7 +167,7 @@ process filterReads { ...@@ -167,7 +167,7 @@ process filterReads {
dedupDesign = dedupReads dedupDesign = dedupReads
.map{ sampleId, bam, bai, biosample, factor, treatment, replicate, controlId -> .map{ sampleId, bam, bai, biosample, factor, treatment, replicate, controlId ->
"$sampleId\t$bam\t$bai\t$biosample\t$factor\t$treatment\t$replicate\t$controlId\n"} "$sampleId\t$bam\t$bai\t$biosample\t$factor\t$treatment\t$replicate\t$controlId\n"}
.collectFile(name:'design_dedup.tsv', seed:"sample_id\tbam_reads\tbam_index\tbiosample\tfactor\ttreatment\treplicate\tcontrolId\n", storeDir:"$baseDir/output/design") .collectFile(name:'design_dedup.tsv', seed:"sample_id\tbam_reads\tbam_index\tbiosample\tfactor\ttreatment\treplicate\tcontrol_id\n", storeDir:"$baseDir/output/design")
// Quality Metrics using deeptools // Quality Metrics using deeptools
process experimentQC { process experimentQC {
......
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