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Commit 96d867c7 authored by Venkat Malladi's avatar Venkat Malladi
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Fix versions.

parent 7b47be12
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1 merge request!23Resolve "Output software versions and methods and references"
Pipeline #3545 failed with stages
in 2 hours, 50 minutes, and 53 seconds
...@@ -132,7 +132,7 @@ process alignReads { ...@@ -132,7 +132,7 @@ process alignReads {
input: input:
set sampleId, reads, experimentId, biosample, factor, treatment, replicate, controlId from trimmedReads set sampleId, reads, experimentId, biosample, factor, treatment, replicate, controlId from trimmedReads
file index from bwaIndex.first() file index from bwaIndex.distinct()
output: output:
...@@ -491,17 +491,17 @@ process softwareReport { ...@@ -491,17 +491,17 @@ process softwareReport {
input: input:
file trimReads_vf from trimReadsVersions.collect().first() file ('version_*.txt') from trimReadsVersions.collect().distinct()
file alignReads_vf from alignReadsVersions.collect().first() file ('version_*.txt') from alignReadsVersions.collect().distinct()
file filterReads_vf from filterReadsVersions.collect().first() file ('version_*.txt') from filterReadsVersions.collect().distinct()
file convertReads_vf from convertReadsVersions.collect().first() file ('version_*.txt') from convertReadsVersions.collect().distinct()
file crossReads_vf from crossReadsVersions.collect().first() file ('version_*.txt') from crossReadsVersions.collect().distinct()
file callPeaksMACS_vf from callPeaksMACSVersions.collect().first() file ('version_*.txt') from callPeaksMACSVersions.collect().distinct()
file consensusPeaks_vf from consensusPeaksVersions.collect().first() file ('version_*.txt') from consensusPeaksVersions.collect().distinct()
file peakAnnotation_vf from peakAnnotationVersions.collect().first() file ('version_*.txt') from peakAnnotationVersions.collect().distinct()
file motifSearch_vf from motifSearchVersions.collect().first().ifEmpty() file ('version_*.txt') from motifSearchVersions.collect().distinct().ifEmpty()
file diffPeaks_vf from diffPeaksVersions.collect().first().ifEmpty() file ('version_*.txt') from diffPeaksVersions.collect().distinct().ifEmpty()
file experimentQC_vf from experimentQCVersions.collect().first() file ('version_*.txt') from experimentQCVersions.collect().distinct()
output: output:
......
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