From 96d867c793b82efc423242d5acdc274ce8cf15ce Mon Sep 17 00:00:00 2001 From: Venkat Malladi <venkat.malladi@utsouthwestern.edu> Date: Tue, 16 Apr 2019 14:13:04 -0500 Subject: [PATCH] Fix versions. --- workflow/main.nf | 24 ++++++++++++------------ 1 file changed, 12 insertions(+), 12 deletions(-) diff --git a/workflow/main.nf b/workflow/main.nf index 3408dea..e19b19c 100644 --- a/workflow/main.nf +++ b/workflow/main.nf @@ -132,7 +132,7 @@ process alignReads { input: set sampleId, reads, experimentId, biosample, factor, treatment, replicate, controlId from trimmedReads - file index from bwaIndex.first() + file index from bwaIndex.distinct() output: @@ -491,17 +491,17 @@ process softwareReport { input: - file trimReads_vf from trimReadsVersions.collect().first() - file alignReads_vf from alignReadsVersions.collect().first() - file filterReads_vf from filterReadsVersions.collect().first() - file convertReads_vf from convertReadsVersions.collect().first() - file crossReads_vf from crossReadsVersions.collect().first() - file callPeaksMACS_vf from callPeaksMACSVersions.collect().first() - file consensusPeaks_vf from consensusPeaksVersions.collect().first() - file peakAnnotation_vf from peakAnnotationVersions.collect().first() - file motifSearch_vf from motifSearchVersions.collect().first().ifEmpty() - file diffPeaks_vf from diffPeaksVersions.collect().first().ifEmpty() - file experimentQC_vf from experimentQCVersions.collect().first() + file ('version_*.txt') from trimReadsVersions.collect().distinct() + file ('version_*.txt') from alignReadsVersions.collect().distinct() + file ('version_*.txt') from filterReadsVersions.collect().distinct() + file ('version_*.txt') from convertReadsVersions.collect().distinct() + file ('version_*.txt') from crossReadsVersions.collect().distinct() + file ('version_*.txt') from callPeaksMACSVersions.collect().distinct() + file ('version_*.txt') from consensusPeaksVersions.collect().distinct() + file ('version_*.txt') from peakAnnotationVersions.collect().distinct() + file ('version_*.txt') from motifSearchVersions.collect().distinct().ifEmpty() + file ('version_*.txt') from diffPeaksVersions.collect().distinct().ifEmpty() + file ('version_*.txt') from experimentQCVersions.collect().distinct() output: -- GitLab