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Commit 6cbb7ab0 authored by Beibei Chen's avatar Beibei Chen
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Add nextflow config file

parent 3d70fc56
1 merge request!1Merge develop into master
...@@ -7,19 +7,17 @@ ...@@ -7,19 +7,17 @@
# ----------------------------------------------------------------------------- # -----------------------------------------------------------------------------
# A unique identifier for the workflow package, text/underscores only # A unique identifier for the workflow package, text/underscores only
name: 'rnaseq_bicf' name: 'chipseq_analysis_bicf'
# Who wrote this? # Who wrote this?
author: 'Brandi Cantarel' author: 'Beibei Chen'
# A contact email address for questions # A contact email address for questions
email: 'biohpc-help@utsouthwestern.edu' email: 'biohpc-help@utsouthwestern.edu'
# A more informative title for the workflow package # A more informative title for the workflow package
title: 'BICF RNASeq Analysis Workflow' title: 'BICF ChIP-seq Analysis Workflow'
# A summary of the workflow package in plain text # A summary of the workflow package in plain text
description: | description: |
This is a workflow package for the BioHPC/BICF RNASeq workflow system. This is a workflow package for the BioHPC/BICF ChIP-seq workflow system.
It implements a simple RNASeq analysis workflow using TrimGalore, HiSAT,FeatureCounts, It implements a simple ChIP-seq analysis workflow using deepTools, Diffbind, ChipSeeker MAnorm and MEME-CHIP, visualization application.
StringTie and statistical analysis using EdgeR and Ballgown, plus a simple R Shiny
visualization application.
# ----------------------------------------------------------------------------- # -----------------------------------------------------------------------------
# DOCUMENTATION # DOCUMENTATION
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