Merge branch 'master' into '8-update-documentation' (5f54d2ec) · Commits · BICF / Astrocyte / chipseq_analysis · GitLab

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Astrocyte
chipseq_analysis
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5f54d2ec

Commit 5f54d2ec authored 6 years ago by

Venkat Malladi

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Merge branch 'master' into '8-update-documentation'

# Conflicts:
#   docs/index.md

parents f723bd56 cfdc3a98

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1 merge request!35Resolve "Update documentation"

Pipeline #3732 failed with stages

in 17 hours, 26 minutes, and 59 seconds

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.gitignore 3 additions, 0 deletions

.gitignore
.gitlab-ci.yml 40 additions, 6 deletions

.gitlab-ci.yml
README.md 1 addition, 0 deletions

README.md
astrocyte_pkg.yml 41 additions, 15 deletions

astrocyte_pkg.yml
docs/design_example.csv 0 additions, 7 deletions

docs/design_example.csv
docs/design_example.txt 5 additions, 0 deletions

docs/design_example.txt
docs/index.md 1 addition, 1 deletion

docs/index.md
docs/references.md 57 additions, 0 deletions

docs/references.md
env.md 0 additions, 17 deletions

env.md
workflow/conf/biohpc.config 5 additions, 2 deletions

workflow/conf/biohpc.config
workflow/conf/multiqc_config.yaml 97 additions, 0 deletions

workflow/conf/multiqc_config.yaml
workflow/main.nf 171 additions, 28 deletions

workflow/main.nf
workflow/nextflow.config 9 additions, 0 deletions

workflow/nextflow.config
workflow/scripts/annotate_peaks.R 6 additions, 1 deletion

workflow/scripts/annotate_peaks.R
workflow/scripts/call_peaks_macs.py 48 additions, 22 deletions

workflow/scripts/call_peaks_macs.py
workflow/scripts/check_design.py 42 additions, 2 deletions

workflow/scripts/check_design.py
workflow/scripts/convert_reads.py 21 additions, 4 deletions

workflow/scripts/convert_reads.py
workflow/scripts/diff_peaks.R 6 additions, 1 deletion

workflow/scripts/diff_peaks.R
workflow/scripts/experiment_qc.py 41 additions, 11 deletions

workflow/scripts/experiment_qc.py
workflow/scripts/generate_references.py 67 additions, 0 deletions

workflow/scripts/generate_references.py

with 661 additions and 117 deletions

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