Resolve "Update documentation"

Review and assign to Venkat Closes #8 (closed)

changed milestone to %1.0.0

added documentation enhancement labels

added 156 commits

• f723bd56...cfdc3a98 - 155 commits from branch master
• 5f54d2ec - Merge branch 'master' into '8-update-documentation'

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I think it looks good. A couple of changes:

• Minor. Maybe change "However, the pipeline should be able to run on any system that Nextflow supports" to "However, the pipeline should be able to run on any system that supports Nextflow".
• Explain default output location if not specified in example bash script.

added 1 commit

• 41fcff0b - Updated changes suggested by Spencer and fix pipeline error.

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added 1 commit

• d9a7f041 - Add in authors.

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added 1 commit

• aa328cd4 - Update diff peaks.

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mentioned in commit 304683ef

merged