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BICF
Astrocyte
chipseq_analysis
Commits
24f3252e
Commit
24f3252e
authored
Mar 28, 2020
by
Venkat Malladi
Browse files
remove after script.
parent
fa258f22
Pipeline
#6414
failed with stages
in 10 seconds
Changes
1
Pipelines
1
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.gitlab-ci.yml
View file @
24f3252e
...
...
@@ -40,8 +40,6 @@ single_end_mouse:
script
:
-
nextflow run workflow/main.nf --astrocyte
true
-
pytest -m singleend
after_script
:
-
rm -rf work/
paired_end_human
:
stage
:
single
...
...
@@ -52,8 +50,6 @@ paired_end_human:
script
:
-
nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd
true
--astrocyte
false
-
pytest -m pairedend
after_script
:
-
rm -rf work/
single_end_single_control
:
stage
:
single
...
...
@@ -64,8 +60,6 @@ single_end_single_control:
script
:
-
nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_single_contol_SE.txt" --genome 'GRCh38' --pairedEnd
false
--astrocyte
false
-
pytest -m singlecontrol
after_script
:
-
rm -rf work/
single_end_diff
:
stage
:
multiple
...
...
@@ -77,8 +71,6 @@ single_end_diff:
-
nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --astrocyte
false
-
pytest -m singleend
-
pytest -m singlediff
after_script
:
-
rm -rf work/
paired_end_diff
:
only
:
...
...
@@ -88,8 +80,6 @@ paired_end_diff:
-
nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_PE.txt" --genome 'GRCh38' --pairedEnd
true
--astrocyte
false
-
pytest -m pairedend
-
pytest -m paireddiff
after_script
:
-
rm -rf work/
single_end_skip
:
stage
:
skip
...
...
@@ -98,8 +88,6 @@ single_end_skip:
script
:
-
nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --skipDiff
true
--skipMotif
true
--skipPlotProfile
true
--astrocyte
false
-
pytest -m singleskip_true
after_script
:
-
rm -rf work/
cleanup_job
:
...
...
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