.gitlab-ci.yml

before_script:
  - module add  python/3.6.1-2-anaconda
  - pip install --user pytest-pythonpath
  - module load nextflow/0.24.1-SNAPSHOT
  - ln -s /project/shared/bicf_workflow_ref/workflow_testdata/chipseq/*fastq.gz test_data/

test:
  script:
  - nextflow run workflow/main.nf 
  - pytest