Resolve 37-Design File Check

Closes #37 (closed)

workflow/scripts/check_design.py

@@ -97,7 +97,7 @@ def main():
     logger.addHandler(handler)
 
     # Read files as dataframes
-    design_df = pd.read_csv(args.design, sep=',')
+    design_df = pd.read_csv(args.design, sep=',', converters={'Sample': str.strip, 'fastq_R1': str.strip, 'fastq_R2': str.strip})
     fastq_df = pd.read_csv(args.fastq, sep='\t', names=['name', 'path'])
 
     # Check design file
@@ -107,4 +107,4 @@ def main():
     new_design_df.to_csv('design.checked.csv', header=True, sep=',', index=False)
 
 if __name__ == '__main__':
-    main()
\ No newline at end of file
+    main()