Commits · 8391da9568f72f055faa1608692150c0c5611eb4 · BICF / Astrocyte / cellranger_count · GitLab

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Jun 27, 2019
- Add MultiQC to output. Add version and reference material. fix README · 8391da95
  Jeremy Mathews authored 5 years ago
  
  8391da95
May 24, 2019
- Error Check moved to Bash Script · d1bee614
  Jeremy Mathews authored 5 years ago
  
  d1bee614
May 23, 2019
- Folder and File Check issue #25 · 40481dcf
  Jeremy Mathews authored 5 years ago
  
  40481dcf
May 22, 2019
- Module Load moved to top of nextflow processes · 185d1ef0
  Jeremy Mathews authored 5 years ago
  
  185d1ef0
May 03, 2019
- Put check design ouput in misc · 14ac1946
  Gervaise Henry authored 5 years ago
  
  14ac1946
- Add run name param · 991c35f4
  Gervaise Henry authored 5 years ago
  
  991c35f4
Mar 27, 2019
- Remove redundant process name in process tag · ca3ea150
  Gervaise Henry authored 6 years ago
  
  ca3ea150
- Rename fastqs by sample not lane · 382be8c7
  Gervaise Henry authored 6 years ago
  
  382be8c7
Mar 22, 2019
- Fix module loads in main.nfto address #13 · e4f3197b
  Gervaise Henry authored 6 years ago
  
  e4f3197b
Mar 21, 2019
- Fix astrocyte param for implicit boolean conversion · cf9d3be8
  David Trudgian authored 6 years ago
  
  cf9d3be8
- Add hostname and ulimit -a to all processes for diagnosis · c43d49d7
  Gervaise Henry authored 6 years ago
  
  c43d49d7
Mar 12, 2019
- Set queues instead of memory in main.nf until Astrocyte update to use custom configs · b0677edf
  Gervaise Henry authored 6 years ago
  
  b0677edf
- Add module loads to processes in main.nf until custom configs fixed in astrocyte · b965b5d4
  Gervaise Henry authored 6 years ago
  
  b965b5d4
Mar 11, 2019
- Fix param erro · f236a41e
  Gervaise Henry authored 6 years ago
  
  f236a41e
- Put config params into main.nf for astrocyte · eae028c1
  Gervaise Henry authored 6 years ago
  
  eae028c1
- Copy memory requirement to main.nf for astrocyte · 745f08e0
  Gervaise Henry authored 6 years ago
  
  745f08e0
Mar 10, 2019
- Change concatenated genomeLocation to genomeLocationFull · dcec356b
  Gervaise Henry authored 6 years ago
  
  dcec356b
- Change params.genomeLocation to concatenate with params.genome · 73a49881
  Gervaise Henry authored 6 years ago
  
  73a49881
- Change kitVersion from numeric to string value · 9fc2b894
  Gervaise Henry authored 6 years ago
  
  9fc2b894
Mar 05, 2019
- Add 10x chemistry version as option to address #11 · 735fdf18
  Gervaise Henry authored 6 years ago
  
  735fdf18
- Add cli parameter option for output folder to address #4 · 8fc88d18
  Gervaise Henry authored 6 years ago
  
  8fc88d18
Mar 04, 2019
- Make reference folder follow standard to fix #2 · 3d24ed7e
  Gervaise Henry authored 6 years ago
  
  3d24ed7e
- Remove the full folder for references to fix #2 · 8aac15b4
  Gervaise Henry authored 6 years ago
  
  8aac15b4
- Change version variable to string to fix #8 · 517ccbe9
  Gervaise Henry authored 6 years ago
  
  517ccbe9
- Add 3.0.2 as a param option in astrocyte-pkg.yml, main.nf and biohpc.config to address #8 · fd8f3ac6
  Gervaise Henry authored 6 years ago
  
  fd8f3ac6
Feb 07, 2019
- Add params.version to main.nf to complete #1 · 23282d4e
  Gervaise Henry authored 6 years ago
  
  23282d4e
- Implement VM cellranger version handling for #1 · bea0bb6d
  Gervaise Henry authored 6 years ago
  
  bea0bb6d
- Fixes design file overwrite #6 · 58df1814
  Gervaise Henry authored 6 years ago
  
  58df1814
Sep 11, 2018
- Embed module load cellranger into if/then/else · a2733bff
  Gervaise Henry authored 6 years ago
  
  a2733bff
- Point transcriptome to ./ · 2fb61286
  Gervaise Henry authored 6 years ago
  
  2fb61286
Sep 07, 2018
- Fix designFile location passage to checkDesignFile process · 01a09551
  Gervaise Henry authored 6 years ago
  
  01a09551
- Hardwire ref genome locations into astrocyte yml · 2ada067d
  Gervaise Henry authored 6 years ago
  
  2ada067d
- Fix debug output for genomes · 5f3b547d
  Gervaise Henry authored 6 years ago
  
  5f3b547d
- Add more report for genome fail · ed43083f
  Gervaise Henry authored 6 years ago
  
  ed43083f
- Revert and add outputs for genome param and ref to error exit output · bf96062e
  Gervaise Henry authored 6 years ago
  
  bf96062e
- Revert genomes changes and try using {} · ee5e2fd6
  Gervaise Henry authored 6 years ago
  
  ee5e2fd6
Sep 05, 2018
- Update main.nf · b7c95b73
  Gervaise Henry authored 6 years ago
  
  b7c95b73
- Update main.nf · 30d514f5
  Gervaise Henry authored 6 years ago
  
  30d514f5
Sep 04, 2018
- Try changing ref variable name · 17b6ab47
  Gervaise Henry authored 6 years ago
  
  17b6ab47
Sep 01, 2018
- Fix force-cells · d65e96f9
  Gervaise Henry authored 6 years ago
  
  d65e96f9