Commits · 4da781e745a34bf02c851a2f38b82129db462896 · BICF / Astrocyte / cellranger_count

May 25, 2020
- Add singularity to astrocyte · 4da781e7
  Gervaise Henry authored 4 years ago
  
  4da781e7
Apr 26, 2020
- Merge branch '45-bug.multiqc' into 'develop' · b5306c4a
  Gervaise Henry authored 5 years ago
```
Remove multiqc module

Closes #45

See merge request !69
```
  b5306c4a
- Update CHANGELOG.md · bae2fcb5
  Gervaise Henry authored 5 years ago
  
  bae2fcb5
- Remove multiqc module · 6fca166f
  Gervaise Henry authored 5 years ago
  
  6fca166f
Apr 25, 2020
- Merge branch 'track.pipeline' into 'develop' · f32d0160
  Gervaise Henry authored 5 years ago
```
Track.pipeline

See merge request !68
```
  f32d0160
- Fix erroneous ci flags · 2838803e
  Gervaise Henry authored 5 years ago
  
  2838803e
- Convert tracking to curl · 49d27e42
  Gervaise Henry authored 5 years ago
  
  49d27e42
- Move handlers to bottom of .nf · c44a8e26
  Gervaise Henry authored 5 years ago
  
  c44a8e26
- Test println in onComplete · 9962226e
  Gervaise Henry authored 5 years ago
  
  9962226e
- Fix astrocyte bool · 13a0f3d8
  Gervaise Henry authored 5 years ago
  
  13a0f3d8
- Rearrange scripts · 30e24505
  Gervaise Henry authored 5 years ago
  
  30e24505
- Move onError and onComplete scripts outside of handlers · 400f7a82
  Gervaise Henry authored 5 years ago
  
  400f7a82
- Add status and onError, on Complete updates · 73181ef6
  Gervaise Henry authored 5 years ago
  
  73181ef6
- Add trackStart process · 406b47be
  Gervaise Henry authored 5 years ago
  
  406b47be
Apr 20, 2020
- Merge branch '44-fix.tread.error' into 'develop' · f5d459f2
  Gervaise Henry authored 5 years ago
```
Add ulimit -u to all cellranger processes

Closes #44

See merge request !66
```
  f5d459f2
- Add ulimit -u to all cellranger processes · 4c9062b8
  Gervaise Henry authored 5 years ago
  
  4c9062b8
Apr 16, 2020
- Merge branch 'master' into 'develop' · 17ef81b9
  Gervaise Henry authored 5 years ago
```
Drop indev in version, finish adding aws details

See merge request !65
```
  17ef81b9
- Drop indev in version, finish adding aws details · a1d75b8a
  Gervaise Henry authored 5 years ago
  
  a1d75b8a
- Merge branch 'master' into 'develop' · 36e60a3d
  Gervaise Henry authored 5 years ago
```
Master

See merge request !64
```
  36e60a3d
Apr 15, 2020
- Update index.md · c54dd859
  Gervaise Henry authored 5 years ago
  
  c54dd859
- Update astrocyte_pkg.yml with cellranger 2.2.0 · a46a35ea
  Gervaise Henry authored 5 years ago
  
  a46a35ea
- Merge branch 'develop' into 'master' · 0f50ff0a
  Gervaise Henry authored 5 years ago
```
Develop

See merge request !63
```
  0f50ff0a
- Merge branch '41-containerize' into 'develop' · e634ce8e
  Gervaise Henry authored 5 years ago
```
Resolve "Containerize"

Closes #41

See merge request !62
```
  e634ce8e
- Fix mm10 ci trigger criteria · d52e0fbb
  Gervaise Henry authored 5 years ago
  
  d52e0fbb
- Change ci job run criteria · ab560486
  Gervaise Henry authored 5 years ago
  
  ab560486
- Add GitLab templates · 208b8334
  Gervaise Henry authored 5 years ago
  
  208b8334
- Update changelog · aab7475e
  Gervaise Henry authored 5 years ago
  
  aab7475e
- Update CI · 28602579
  Gervaise Henry authored 5 years ago
  
  28602579
- Add chemistry flag to all cellranger processes · db82d75f
  Gervaise Henry authored 5 years ago
  
  db82d75f
- Remove extension from ci cellranger commands · d2890509
  Gervaise Henry authored 5 years ago
  
  d2890509
- Change container test data to have fastq_path folder · c671c69e
  Gervaise Henry authored 5 years ago
  
  c671c69e
- Change singularity run to exec · 82d4928e
  Gervaise Henry authored 5 years ago
  
  82d4928e
- Fix stage name · e78016d5
  Gervaise Henry authored 5 years ago
  
  e78016d5
- Add container test as stage for CI · a9b05dbd
  Gervaise Henry authored 5 years ago
  
  a9b05dbd
- Fixcellranger 3.0.1 to 2.2.0 change · 5d4b2a05
  Gervaise Henry authored 5 years ago
  
  5d4b2a05
- Containerize · 43c8b517
  Gervaise Henry authored 5 years ago
  
  43c8b517
- Merge branch '42-update.params' into 'develop' · dbb856c4
  Gervaise Henry authored 5 years ago
```
Resolve "Update params to current standards"

Closes #42

See merge request !61
```
  dbb856c4
Apr 14, 2020
- Update changelog · c311c78c
  Gervaise Henry authored 5 years ago
  
  c311c78c
- Update pipeline status badges · 6b88586a
  Gervaise Henry authored 5 years ago
  
  6b88586a
- Update pipeline status badges · df29d851
  Gervaise Henry authored 5 years ago
  
  df29d851