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Commit d02c3e8b authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Merge branch '18-change.process.selector' into 'develop'

Resolve "Change process selector"

Closes #18

See merge request !34
parents 31d1da2c ca3ea150
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3 merge requests!53Develop,!35Develop,!34Resolve "Change process selector"
Pipeline #3701 passed with stages
in 36 minutes and 1 second
...@@ -2,20 +2,19 @@ process { ...@@ -2,20 +2,19 @@ process {
executor = 'slurm' executor = 'slurm'
queue='super' queue='super'
// Process specific configuration withLabel: checkDesignFile {
$checkDesignFile {
module = ['python/3.6.1-2-anaconda'] module = ['python/3.6.1-2-anaconda']
executor = 'local' executor = 'local'
} }
$count211 { withLabel: count211 {
module = ['cellranger/2.1.1'] module = ['cellranger/2.1.1']
queue = '128GB,256GB,256GBv1,384GB' queue = '128GB,256GB,256GBv1,384GB'
} }
$count301 { withLabel: count301 {
module = ['cellranger/3.0.1'] module = ['cellranger/3.0.1']
queue = '128GB,256GB,256GBv1,384GB' queue = '128GB,256GB,256GBv1,384GB'
} }
$count302 { withLabel: count302 {
module = ['cellranger/3.0.2'] module = ['cellranger/3.0.2']
queue = '128GB,256GB,256GBv1,384GB' queue = '128GB,256GB,256GBv1,384GB'
} }
......
...@@ -105,7 +105,7 @@ chemistryParam302 = chemistryParam ...@@ -105,7 +105,7 @@ chemistryParam302 = chemistryParam
process count211 { process count211 {
queue '128GB,256GB,256GBv1,384GB' queue '128GB,256GB,256GBv1,384GB'
tag "count211-$sample" tag "$sample"
publishDir "$outDir/${task.process}", mode: 'copy' publishDir "$outDir/${task.process}", mode: 'copy'
...@@ -143,7 +143,7 @@ process count211 { ...@@ -143,7 +143,7 @@ process count211 {
process count301 { process count301 {
queue '128GB,256GB,256GBv1,384GB' queue '128GB,256GB,256GBv1,384GB'
tag "count301-$sample" tag "$sample"
publishDir "$outDir/${task.process}", mode: 'copy' publishDir "$outDir/${task.process}", mode: 'copy'
...@@ -182,7 +182,7 @@ process count301 { ...@@ -182,7 +182,7 @@ process count301 {
process count302 { process count302 {
queue '128GB,256GB,256GBv1,384GB' queue '128GB,256GB,256GBv1,384GB'
tag "count302-$sample" tag "$sample"
publishDir "$outDir/${task.process}", mode: 'copy' publishDir "$outDir/${task.process}", mode: 'copy'
......
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