diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config index e69f0507b028c493d49bbbada40e051034dc0ac7..6f19408ac80f7855559ccf159dd22afd9241e80b 100755 --- a/workflow/conf/biohpc.config +++ b/workflow/conf/biohpc.config @@ -2,20 +2,19 @@ process { executor = 'slurm' queue='super' - // Process specific configuration - $checkDesignFile { + withLabel: checkDesignFile { module = ['python/3.6.1-2-anaconda'] executor = 'local' } - $count211 { + withLabel: count211 { module = ['cellranger/2.1.1'] queue = '128GB,256GB,256GBv1,384GB' } - $count301 { + withLabel: count301 { module = ['cellranger/3.0.1'] queue = '128GB,256GB,256GBv1,384GB' } - $count302 { + withLabel: count302 { module = ['cellranger/3.0.2'] queue = '128GB,256GB,256GBv1,384GB' } diff --git a/workflow/main.nf b/workflow/main.nf index 7c3779884126d59efce2c59ef53e38c270a8a2ef..43933ba559205017eec4bb3f8ceb701e460dd95d 100755 --- a/workflow/main.nf +++ b/workflow/main.nf @@ -105,7 +105,7 @@ chemistryParam302 = chemistryParam process count211 { queue '128GB,256GB,256GBv1,384GB' - tag "count211-$sample" + tag "$sample" publishDir "$outDir/${task.process}", mode: 'copy' @@ -143,7 +143,7 @@ process count211 { process count301 { queue '128GB,256GB,256GBv1,384GB' - tag "count301-$sample" + tag "$sample" publishDir "$outDir/${task.process}", mode: 'copy' @@ -182,7 +182,7 @@ process count301 { process count302 { queue '128GB,256GB,256GBv1,384GB' - tag "count302-$sample" + tag "$sample" publishDir "$outDir/${task.process}", mode: 'copy'