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Commit 7a8d4bc2 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Merge branch 'RemoveExceptFromCI' into 'develop'

Remove md changes from CI

See merge request !55
parents e3687c64 b762db38
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2 merge requests!57Develop,!55Remove md changes from CI
Pipeline #4624 passed with stages
in 20 minutes and 10 seconds
...@@ -39,8 +39,6 @@ simple_1: ...@@ -39,8 +39,6 @@ simple_1:
refs: refs:
- develop - develop
- master - master
changes:
- "**/*.md"
script: script:
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s1r500/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s1r500/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'three' --version '3.1.0' - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s1r500/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s1r500/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'three' --version '3.1.0'
- pytest -m count310 - pytest -m count310
...@@ -66,8 +64,6 @@ simple_2: ...@@ -66,8 +64,6 @@ simple_2:
- develop - develop
- master - master
- tags - tags
changes:
- "**/*.md"
script: script:
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/mu.v3s1r500/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/mu.v3s1r500/design.csv" --genome 'mm10-3.0.0' --kitVersion 'three' --version '3.1.0' - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/mu.v3s1r500/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/mu.v3s1r500/design.csv" --genome 'mm10-3.0.0' --kitVersion 'three' --version '3.1.0'
- pytest -m count310 - pytest -m count310
...@@ -92,8 +88,6 @@ detailed_1: ...@@ -92,8 +88,6 @@ detailed_1:
except: except:
refs: refs:
- tags - tags
changes:
- "**/*.md"
script: script:
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'auto' --version '3.1.0' - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'auto' --version '3.1.0'
- pytest -m count310 - pytest -m count310
...@@ -119,8 +113,6 @@ detailed_2: ...@@ -119,8 +113,6 @@ detailed_2:
except: except:
refs: refs:
- tags - tags
changes:
- "**/*.md"
script: script:
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'auto' --version '3.0.2' - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'auto' --version '3.0.2'
- pytest -m count302 - pytest -m count302
...@@ -145,8 +137,6 @@ detailed_3: ...@@ -145,8 +137,6 @@ detailed_3:
except: except:
refs: refs:
- tags - tags
changes:
- "**/*.md"
script: script:
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/mu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/mu.v3s2r10k/design.csv" --genome 'mm10-3.0.0' --kitVersion 'three' --version '3.0.1' - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/mu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/mu.v3s2r10k/design.csv" --genome 'mm10-3.0.0' --kitVersion 'three' --version '3.0.1'
- pytest -m count301 - pytest -m count301
...@@ -171,8 +161,6 @@ detailed_4: ...@@ -171,8 +161,6 @@ detailed_4:
except: except:
refs: refs:
- tags - tags
changes:
- "**/*.md"
script: script:
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v2s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v2s2r10k/design.csv" --genome 'GRCh38-1.2.0' --kitVersion 'two' --version '2.1.1' - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v2s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v2s2r10k/design.csv" --genome 'GRCh38-1.2.0' --kitVersion 'two' --version '2.1.1'
- pytest -m count211 - pytest -m count211
......
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