diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 1ab8b0d683849adf9cee93eafe7a2dd71370a60c..03a422fc78ecb76ac0bae7962cda596acec7e15b 100755 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -39,8 +39,6 @@ simple_1: refs: - develop - master - changes: - - "**/*.md" script: - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s1r500/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s1r500/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'three' --version '3.1.0' - pytest -m count310 @@ -66,8 +64,6 @@ simple_2: - develop - master - tags - changes: - - "**/*.md" script: - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/mu.v3s1r500/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/mu.v3s1r500/design.csv" --genome 'mm10-3.0.0' --kitVersion 'three' --version '3.1.0' - pytest -m count310 @@ -92,8 +88,6 @@ detailed_1: except: refs: - tags - changes: - - "**/*.md" script: - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'auto' --version '3.1.0' - pytest -m count310 @@ -119,8 +113,6 @@ detailed_2: except: refs: - tags - changes: - - "**/*.md" script: - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'auto' --version '3.0.2' - pytest -m count302 @@ -145,8 +137,6 @@ detailed_3: except: refs: - tags - changes: - - "**/*.md" script: - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/mu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/mu.v3s2r10k/design.csv" --genome 'mm10-3.0.0' --kitVersion 'three' --version '3.0.1' - pytest -m count301 @@ -171,8 +161,6 @@ detailed_4: except: refs: - tags - changes: - - "**/*.md" script: - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v2s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v2s2r10k/design.csv" --genome 'GRCh38-1.2.0' --kitVersion 'two' --version '2.1.1' - pytest -m count211