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atacseq_analysis
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BICF
Astrocyte
atacseq_analysis
Commits
ec9f9468
Commit
ec9f9468
authored
5 years ago
by
Holly Ruess
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fix CI test
parent
b2129f4e
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1 merge request
!10
Resolve "Fix Experiment QC"
Pipeline
#5294
passed with stages
in 9 hours, 39 minutes, and 36 seconds
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workflow/tests/test_experiment_qc.py
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workflow/tests/test_experiment_qc.py
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View file @
ec9f9468
...
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@@ -27,45 +27,14 @@ def design_bam():
def
test_coverage_singleend_human
():
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
sample_mbs.npz
'
))
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
coverage.pdf
'
))
@pytest.mark.singleend_human
def
test_spearman_singleend_human
():
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
heatmap_SpearmanCorr.pdf
'
))
@pytest.mark.singleend_human
def
test_pearson_singleend_human
():
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
heatmap_PearsonCorr.pdf
'
))
@pytest.mark.singleend_human
def
test_fingerprint_singleend_human
():
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
ENCLB170KFO_fingerprint.pdf
'
))
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
ENCLB969KTX_fingerprint.pdf
'
))
@pytest.mark.pairedend_mouse
def
test_coverage_pairedend_mouse
():
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
sample_mbs.npz
'
))
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
coverage.pdf
'
))
@pytest.mark.pairedend_mouse
def
test_spearman_pairedend_mouse
():
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
heatmap_SpearmanCorr.pdf
'
))
@pytest.mark.pairedend_mouse
def
test_pearson_pairedend_mouse
():
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
heatmap_PearsonCorr.pdf
'
))
@pytest.mark.pairedend_mouse
def
test_fingerprint_pairedend_mouse
():
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
ENCLB749GLW_fingerprint.pdf
'
))
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
ENCLB122XDP_fingerprint.pdf
'
))
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