From ec9f94684cbfe3e65465f30fb6b2ee022b53b4d6 Mon Sep 17 00:00:00 2001
From: Holly Ruess <s185797@biohpcwsc012.biohpc.swmed.edu>
Date: Wed, 18 Dec 2019 15:58:29 -0600
Subject: [PATCH] fix CI test
---
workflow/tests/test_experiment_qc.py | 31 ----------------------------
1 file changed, 31 deletions(-)
diff --git a/workflow/tests/test_experiment_qc.py b/workflow/tests/test_experiment_qc.py
index 2cccf00..1401ddd 100644
--- a/workflow/tests/test_experiment_qc.py
+++ b/workflow/tests/test_experiment_qc.py
@@ -27,45 +27,14 @@ def design_bam():
def test_coverage_singleend_human():
assert os.path.exists(os.path.join(test_output_path, 'sample_mbs.npz'))
assert os.path.exists(os.path.join(test_output_path, 'coverage.pdf'))
-
-
-@pytest.mark.singleend_human
-def test_spearman_singleend_human():
assert os.path.exists(os.path.join(test_output_path, 'heatmap_SpearmanCorr.pdf'))
-
-
-@pytest.mark.singleend_human
-def test_pearson_singleend_human():
assert os.path.exists(os.path.join(test_output_path, 'heatmap_PearsonCorr.pdf'))
-@pytest.mark.singleend_human
-def test_fingerprint_singleend_human():
- assert os.path.exists(os.path.join(test_output_path, 'ENCLB170KFO_fingerprint.pdf'))
- assert os.path.exists(os.path.join(test_output_path, 'ENCLB969KTX_fingerprint.pdf'))
-
-
@pytest.mark.pairedend_mouse
def test_coverage_pairedend_mouse():
assert os.path.exists(os.path.join(test_output_path, 'sample_mbs.npz'))
assert os.path.exists(os.path.join(test_output_path, 'coverage.pdf'))
-
-
-@pytest.mark.pairedend_mouse
-def test_spearman_pairedend_mouse():
assert os.path.exists(os.path.join(test_output_path, 'heatmap_SpearmanCorr.pdf'))
-
-
-@pytest.mark.pairedend_mouse
-def test_pearson_pairedend_mouse():
assert os.path.exists(os.path.join(test_output_path, 'heatmap_PearsonCorr.pdf'))
-
-@pytest.mark.pairedend_mouse
-def test_fingerprint_pairedend_mouse():
- assert os.path.exists(os.path.join(test_output_path, 'ENCLB749GLW_fingerprint.pdf'))
- assert os.path.exists(os.path.join(test_output_path, 'ENCLB122XDP_fingerprint.pdf'))
-
-
-
-
--
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