Merge branch '41-astrocyte-cli' into 'dev'

Add in astrocyte 0.3.1 test.

Closes #41

See merge request !29

.gitlab-ci.yml

@@ -18,7 +18,7 @@ user_configuration:
 astrocyte:
   stage: astrocyte
   script:
-  - module load astrocyte/0.2.0
+  - module load astrocyte/0.3.1
   - module unload nextflow
   - cd ..
   - astrocyte_cli validate atacseq_analysis

CHANGELOG.md

@@ -2,6 +2,10 @@
 
 All notable changes to this project will be documented in this file.
 
+## [Unreleased ]
+### Upgraded
+- Updated support for astrocyte 0.3.1
+
 ## [publish_2.0.3 ] - 2020-06-21
 ### Fixed
  - Removed biosample, factor, treatment from design file

README.md

@@ -6,7 +6,7 @@
 |[![coverage report](https://git.biohpc.swmed.edu/BICF/Astrocyte/atacseq_analysis/badges/master/coverage.svg)](https://git.biohpc.swmed.edu/BICF/Astrocyte/atacseq_analysis/commits/master)|[![coverage report](https://git.biohpc.swmed.edu/BICF/Astrocyte/atacseq_analysis/badges/dev/coverage.svg)](https://git.biohpc.swmed.edu/BICF/Astrocyte/atacseq_analysis/commits/dev)|
 
 [![Nextflow](https://img.shields.io/badge/nextflow-%E2%89%A50.31.0-brightgreen)](https://www.nextflow.io/)
-[![Astrocyte](https://img.shields.io/badge/astrocyte-%E2%89%A50.2.0-blue)](https://astrocyte-test.biohpc.swmed.edu/static/docs/index.html)
+[![Astrocyte](https://img.shields.io/badge/astrocyte-%E2%89%A50.3.1-blue)](https://astrocyte-test.biohpc.swmed.edu/static/docs/index.html)
 [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3526148.svg)](https://doi.org/10.5281/zenodo.3526148)
 
 ## Introduction