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atacseq_analysis
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BICF
Astrocyte
atacseq_analysis
Commits
b45e8a00
Commit
b45e8a00
authored
Jun 08, 2020
by
Holly Ruess
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fix testing error
parent
8e447c31
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.gitlab-ci.yml
.gitlab-ci.yml
+2
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workflow/main.nf
workflow/main.nf
+1
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.gitlab-ci.yml
View file @
b45e8a00
...
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@@ -20,7 +20,7 @@ single_end_human:
-
branches
-
master
script
:
-
nextflow run workflow/main.nf
-
NXF_OPTS="-Dleveldb.mmap=false"
nextflow run workflow/main.nf
-
pytest -m singleend_human
...
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@@ -30,5 +30,5 @@ paired_end_mouse:
-
branches
-
master
script
:
-
nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR451NAE_PE.txt" --genome 'GRCm38' --pairedEnd
true
--blacklist
true
-
NXF_OPTS="-Dleveldb.mmap=false"
nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR451NAE_PE.txt" --genome 'GRCm38' --pairedEnd
true
--blacklist
true
-
pytest -m pairedend_mouse
workflow/main.nf
View file @
b45e8a00
...
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@@ -507,6 +507,7 @@ process consensusPeaks {
output:
file '*.replicated.*' into consensusPeaks
file '*.rejected.*' into rejectedPeaks
file '*.replicated_noblacklist*' optional true into blPeaks
file("design_exQC.tsv") into designExperimentQC
file('version_*.txt') into consensusPeaksVersions
...
...
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