fix input error

workflow/scripts/overlap_peaks.py

@@ -182,12 +182,13 @@ def blacklist_peaks(experiment, blacklist):
 
     logger.info("Removing blacklist regions from replicated peaks")
 
+    narrowpead_input = "%s.replicated.narrowPeak" % (experiment)
     # Assign output
     blpo_filename = "%s.replicated_noblacklist.narrowPeak" % (experiment)
 
     # Remove
     steps = [
-        "bedtools intersect -v -a %s -b %s" % (experiment, blacklist),
+        "bedtools intersect -v -a %s -b %s" % (narrowpead_input, blacklist),
         r"""awk 'BEGIN{OFS="\t"} {if ($5>1000) $5=1000; print $0}'""",
         ]
     out, err = utils.run_pipe(steps, blpo_filename)