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atacseq_analysis
Commit 6e63a569 authored by Holly Ruess's avatar Holly Ruess
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fix awk error

parent 1f9debcc
Pipeline #7052 failed with stages
      in 1305 minutes and 46 seconds
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      workflow/scripts/overlap_peaks.py
      View file @ 6e63a569
      ......@@ -188,7 +188,7 @@ def blacklist_peaks(experiment, blacklist):
      # Remove
      steps = [
      "bedtools intersect -v -a %s -b %s" % (experiment, blacklist),
      "awk 'BEGIN{OFS='\t'} {if ($5>1000) $5=1000; print $0}'",
      r"""awk 'BEGIN{OFS="\t"} {if ($5>1000) $5=1000; print $0}'""",
      ]
      out, err = utils.run_pipe(steps, blpo_filename)
      ......
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