Fix scripts.

workflow/conf/biohpc.config

@@ -70,7 +70,7 @@ params {
       tssfile = '/project/shared/bicf_workflow_ref/GRCh38/gencode.tss'
     }
     'GRCm38' {
-      git'
+      bwa = '/project/shared/bicf_workflow_ref/GRCm38'
       genomesize = 'mm'
       chromsizes = '/project/shared/bicf_workflow_ref/GRCm38/genomefile.txt'
       tssfile = '/project/shared/bicf_workflow_ref/GRCh38/gencode.tss'

workflow/scripts/map_qc.py

@@ -10,7 +10,7 @@ import shlex
 import logging
 from multiprocessing import cpu_count
 import pandas as pd
-from python_utils import utils
+import utils
 
 
 EPILOG = '''

workflow/scripts/overlap_peaks.py

@@ -8,7 +8,7 @@ import logging
 import shutil
 import pandas as pd
 import sys
-from python_utils import utils
+import utils
 
 EPILOG = '''
 For more details: