diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config
index 21a5343e9f9883387c9dec5a694471cde460c9e2..df20dd99645cfcea7c380b2612aede28e2bae80f 100644
--- a/workflow/conf/biohpc.config
+++ b/workflow/conf/biohpc.config
@@ -70,7 +70,7 @@ params {
       tssfile = '/project/shared/bicf_workflow_ref/GRCh38/gencode.tss'
     }
     'GRCm38' {
-      git'
+      bwa = '/project/shared/bicf_workflow_ref/GRCm38'
       genomesize = 'mm'
       chromsizes = '/project/shared/bicf_workflow_ref/GRCm38/genomefile.txt'
       tssfile = '/project/shared/bicf_workflow_ref/GRCh38/gencode.tss'
diff --git a/workflow/scripts/map_qc.py b/workflow/scripts/map_qc.py
index 5bb74f0e01151ce0ccd662dcb425f7ce006360ed..d58ae8f9540a175b7c955917092db98bba43d51a 100644
--- a/workflow/scripts/map_qc.py
+++ b/workflow/scripts/map_qc.py
@@ -10,7 +10,7 @@ import shlex
 import logging
 from multiprocessing import cpu_count
 import pandas as pd
-from python_utils import utils
+import utils
 
 
 EPILOG = '''
diff --git a/workflow/scripts/overlap_peaks.py b/workflow/scripts/overlap_peaks.py
index 61f7ac551802538c33c917cece58bb30c02b8da3..514b13d22ed61274c7c7b016ce73fdffb9cba3a4 100644
--- a/workflow/scripts/overlap_peaks.py
+++ b/workflow/scripts/overlap_peaks.py
@@ -8,7 +8,7 @@ import logging
 import shutil
 import pandas as pd
 import sys
-from python_utils import utils
+import utils
 
 EPILOG = '''
 For more details: