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Commit 7aaabf2f authored by Venkat Malladi's avatar Venkat Malladi
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Remove TSS enrich.

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......@@ -269,27 +269,27 @@ process convertReads {
}
// Calculate TSS Enrichment
process tssEnrich {
tag "$sampleId-$replicate"
publishDir "$baseDir/output/${task.process}", mode: 'copy'
input:
set sampleId, deduped, bai, experimentId, biosample, factor, treatment, replicate from tssEnrich
output:
file '*.png' into atacQC
script:
"""
singularity run /project/shared/bicf_workflow_ref/singularity_images/bicf-metaseq:0.1.0.simg $baseDir/scripts/atac_qc.py -b $deduped -p $sampleId -t $tssFile -c $chromSizes
"""
}
//process tssEnrich {
//
// tag "$sampleId-$replicate"
// publishDir "$baseDir/output/${task.process}", mode: 'copy'
//
// input:
//
// set sampleId, deduped, bai, experimentId, biosample, factor, treatment, replicate from tssEnrich
//
//
// output:
//
// file '*.png' into atacQC
//
// script:
//
// """
// singularity run /project/shared/bicf_workflow_ref/singularity_images/bicf-metaseq:0.1.0.simg $baseDir/scripts/atac_qc.py -b $deduped -p $sampleId -t $tssFile -c $chromSizes
// """
//
//}
// Calculate Cross-correlation using phantompeaktools
process crossReads {
......
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