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Commit 7aaabf2f authored by Venkat Malladi's avatar Venkat Malladi
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Remove TSS enrich.

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...@@ -269,27 +269,27 @@ process convertReads { ...@@ -269,27 +269,27 @@ process convertReads {
} }
// Calculate TSS Enrichment // Calculate TSS Enrichment
process tssEnrich { //process tssEnrich {
//
tag "$sampleId-$replicate" // tag "$sampleId-$replicate"
publishDir "$baseDir/output/${task.process}", mode: 'copy' // publishDir "$baseDir/output/${task.process}", mode: 'copy'
//
input: // input:
//
set sampleId, deduped, bai, experimentId, biosample, factor, treatment, replicate from tssEnrich // set sampleId, deduped, bai, experimentId, biosample, factor, treatment, replicate from tssEnrich
//
//
output: // output:
//
file '*.png' into atacQC // file '*.png' into atacQC
//
script: // script:
//
""" // """
singularity run /project/shared/bicf_workflow_ref/singularity_images/bicf-metaseq:0.1.0.simg $baseDir/scripts/atac_qc.py -b $deduped -p $sampleId -t $tssFile -c $chromSizes // singularity run /project/shared/bicf_workflow_ref/singularity_images/bicf-metaseq:0.1.0.simg $baseDir/scripts/atac_qc.py -b $deduped -p $sampleId -t $tssFile -c $chromSizes
""" // """
//
} //}
// Calculate Cross-correlation using phantompeaktools // Calculate Cross-correlation using phantompeaktools
process crossReads { process crossReads {
......
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