adding missing modules

workflow/main.nf

@@ -235,12 +235,12 @@ process annotate {
   script:
   if (params.genome == '/project/shared/bicf_workflow_ref/GRCh38')
   """
-  module load snpeff/4.2
+  module load python/2.7.x-anaconda snpeff/4.2
   java -Xmx10g -jar \$SNPEFF_HOME/snpEff.jar -no-intergenic -lof -c \$SNPEFF_HOME/snpEff.config ${snpeff_vers} final.integrate.vcf.gz | java -Xmx10g -jar \$SNPEFF_HOME/SnpSift.jar annotate ${index_path}/dbSnp.vcf.gz -  | java -Xmx10g -jar \$SNPEFF_HOME/SnpSift.jar annotate ${index_path}/clinvar.vcf.gz - | java -Xmx10g -jar \$SNPEFF_HOME/SnpSift.jar annotate ${index_path}/ExAC.vcf.gz - | java -Xmx10g -jar \$SNPEFF_HOME/SnpSift.jar annotate ${index_path}/cosmic.vcf.gz - | java -Xmx10g -jar \$SNPEFF_HOME/SnpSift.jar dbnsfp -v -db ${index_path}/dbNSFP.txt.gz - | java -Xmx10g -jar \$SNPEFF_HOME/SnpSift.jar gwasCat -db ${index_path}/gwas_catalog.tsv - |bgzip > annot.vcf.gz
   """
   else
   """
-  module load snpeff/4.2
+  module load python/2.7.x-anaconda snpeff/4.2
   java -Xmx10g -jar \$SNPEFF_HOME/snpEff.jar -no-intergenic -lof -c \$SNPEFF_HOME/snpEff.config ${snpeff_vers} final.integrate.vcf.gz |bgzip > annot.vcf.gz
   """
 }