new file: dockerfile

dockerfile

+# Use Jupyter's official container as base image
+FROM jupyter/base-notebook:latest
+
+# Set the working directory in the container
+WORKDIR /app
+
+# Copy the contents of the binder directory into the container
+COPY binder /tmp/binder
+
+# Install all modules required for package installation in Ubuntu
+RUN apt-get update && \
+    apt-get install -y --no-install-recommends $(cat /tmp/binder/apt.txt) && \
+    rm -rf /var/lib/apt/lists/*
+
+# Install Conda and create a conda environment called "d2s"
+RUN conda create --name d2s python=3.9 -y
+
+# Activate the "d2s" conda environment
+SHELL ["conda", "run", "-n", "d2s", "/bin/bash", "-c"]
+
+# Install Python packages listed in requirements.txt
+COPY binder/requirements.txt /tmp/requirements.txt
+RUN pip install --no-cache-dir -r /tmp/requirements.txt
+
+# Install R version specified in the runtime.txt and R packages listed in install.R
+COPY binder/runtime.txt /tmp/runtime.txt
+COPY binder/install.R /tmp/install.R
+RUN Rscript /tmp/install.R
+
+# Install IRkernel and IPykernel
+RUN conda install -c conda-forge r-irkernel -y
+RUN conda install ipykernel -y
+
+# Copy Jupyter notebooks, data, results, and scripts into the container
+COPY ./*.ipynb /app/
+COPY data /app/data
+COPY results /app/results
+COPY scripts /app/scripts
+
+# Configure Jupyter notebook port and command
+EXPOSE 8888
+
+# Start Jupyter Notebook server
+CMD ["jupyter", "notebook", "--ip=0.0.0.0", "--port=8888", "--allow-root"]