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Created with Raphaël 2.2.05May19Apr11Mar1016Jan1Oct15Aug986532130Jul292625reformatted and added commentsmastermasterFixed a bug causing marker for "N-Term" to incorrectly register as a phosphorylation modification.Added regex for ubuquitination and acetylationfixed typo, cleaned up config filefixed unlocalized modifications not being counted in fragment modification analysis by adding a field in the data indicating that the fragment posesses a modificationMerge branch 'fix_unlocalized_peptide_mods_not_adding' into 'master'Merge branch 'master' into 'fix_unlocalized_peptide_mods_not_adding'fix_unlocalized…fix_unlocalized_peptide_mods_not_addingfixed unlocalized modifications not being counted in fragment modification analysis by adding a field in the data indicating that the fragment posesses a modificationmodified config.toml for usein_usein_useadded fragment modification analysis and outputtestadded fragment modification analysis and outputfixed error causing runtimewarningimorived commentingreformatting and cleanupresidue analysis output completemultiple abundance columns implementedresidue modification abundances completed and comments added to codemore progress on residue modificationupdated configsabundance calc in progressadded skeleton methods for fragment and peptide modification proportion calculationsfragment localization completedfragment localization completedcleaned up localization with list comprehensionnon-master protein alignment working with multiple files, stored localization column titles in dict instead of pointless list of dictsinitial implementation of non-master protein alignment and modification parsingadded some type annotationsadded some type annotationscleaned up masterlocalization parsing to remove unnecessary insertion of tuples to the localization list instead of simply appending themrestructured master-vs non-master localization to reduce code duplicationoutlined non-master localization parsingfixed a bug where the only the last protein sequence fie's sequences were contained in the list of the protein sequences due to the list being overwritten and not being appended to upon the ingestion of each fasta filemaster protein localization parsing implementedupdated fasta file inputtestupdated fasta file inputadded fasta file inputisolation of fragment sequence, fixed sample input formattingisolation of fragment sequence