analysis/GRO_seq_TFSEE/cluster_1_tfs.csv

+symbol,ES_D0,ES_D2,ES_D5,ES_D7,ES_D10
+AR,2.645,0.195,1.255,0.755,0.73
+CEBPB,8.0,5.345,3.44,2.54,2.92
+CEBPD,0.84,0.895,0.365,0.25,0.435
+CEBPE,0.005,0.015,0.01,0.0,0.015
+CEBPG,8.805,9.6,10.255,10.94,10.555
+DDIT3,3.545,7.775,6.02,10.41,8.37
+EGR2,0.39,0.005,0.005,0.49,0.305
+EGR3,0.02,0.09,0.025,1.28,0.49
+EGR4,0.005,0.005,0.01,0.425,0.205
+ELF3,2.21,3.685,3.88,52.51,13.54
+ESR1,0.045,0.065,0.03,0.205,0.26
+ESR2,0.28,0.155,0.28,0.415,0.68
+FIGLA,0.015,0.0,0.0,0.0,0.0
+FOSL2,1.235,0.795,1.185,50.66,7.785
+FOXC2,0.07,0.005,0.01,0.175,0.32
+GCM2,0.08,0.045,0.035,0.005,0.02
+GFI1B,0.0,0.015,0.0,0.0,0.01
+GSC,0.25,204.8,0.555,0.09,0.055
+GSC2,0.1,0.0,0.0,0.0,0.015
+HIC1,0.145,0.165,0.065,0.605,0.385
+KLF14,0.03,0.025,0.0,0.0,0.03
+MAFK,4.18,2.8,3.395,5.395,7.09
+MLX,28.085,30.715,18.125,17.77,22.08
+MTF1,2.85,3.065,4.065,5.195,4.16
+NFIC,2.17,4.23,4.19,2.34,4.375
+NFIX,0.055,0.025,0.02,0.335,0.205
+NKX2-3,0.0,0.0,4.155,0.005,0.0
+NR1H3,17.065,15.795,9.21,9.02,7.935
+NR2F6,61.655,57.925,41.47,93.865,67.675
+NR4A2,0.06,0.185,0.215,0.595,1.415
+NRF1,12.775,12.645,15.66,15.51,16.51
+PAX5,0.055,0.0,0.03,0.005,0.025
+PAX6,0.145,0.58,0.07,0.135,25.865
+PITX3,0.07,0.115,0.02,0.0,0.01
+RARA,6.195,10.955,11.025,33.47,26.135
+RFX1,10.79,10.71,6.615,9.515,11.335
+RXRB,8.365,11.415,10.39,15.91,18.145
+SIX3,0.005,6.42,0.105,0.015,0.025
+SMAD2,33.815,63.24,29.905,33.295,33.98
+SMAD3,18.595,12.95,10.205,20.925,35.53
+SMAD4,54.035,47.595,59.69,60.76,66.16
+SOX10,2.095,13.225,0.425,0.18,0.285
+SOX11,6.49,3.32,31.61,65.87,13.725
+SOX4,89.935,50.825,149.125,233.1,229.0
+SOX8,4.705,1.955,0.19,0.72,1.02
+SPZ1,0.025,0.0,0.0,0.0,0.0
+SREBF1,19.795,25.405,19.81,19.805,22.11
+SREBF2,96.135,75.58,60.99,36.32,32.135
+STAT3,27.22,8.29,7.995,15.825,16.81
+TBX15,0.02,0.015,0.01,0.035,0.005
+TFAP2B,0.0,0.0,0.055,0.015,0.01
+TFE3,29.7,10.12,8.635,18.995,17.13
+TFEB,0.88,0.18,0.235,0.5,0.5
+TFEC,0.0,0.0,0.0,0.005,0.005
+TLX1,0.0,0.0,0.015,0.0,0.005
+TP53,103.305,35.18,51.03,48.995,49.785
+USF1,26.51,20.425,28.505,43.945,32.515
+VDR,0.425,0.055,0.095,0.085,0.175
+XBP1,62.435,68.655,96.21,51.89,85.765
+YY1,67.84,55.3,61.2,49.025,62.51
+ZBTB7B,12.2,9.37,10.2,12.825,13.09
+ZEB1,0.035,0.31,0.0,0.155,0.36
+ZIC1,0.115,0.12,0.16,0.07,0.06
+ZIC4,0.02,0.0,0.0,0.025,0.045

analysis/GRO_seq_TFSEE/cluster_2_tfs.csv

+symbol,ES_D0,ES_D2,ES_D5,ES_D7,ES_D10
+DMBX1,0.01,0.07,0.485,0.0,0.045
+ELF4,0.89,0.73,2.49,0.68,3.03
+HIC2,8.515,14.585,17.16,15.31,16.66
+ID4,1.555,1.32,84.935,8.975,47.94
+KLF12,3.72,4.185,8.88,8.085,9.125
+MAF,0.595,0.41,5.81,9.175,4.865
+MZF1,8.885,12.365,17.5,26.0,23.355
+NFE2L2,18.59,23.265,27.355,42.5,29.845
+NKX2-8,0.0,0.0,2.84,0.0,0.01
+OTX1,0.28,1.395,6.275,0.635,0.33
+PAX1,0.005,0.005,3.895,1.11,0.035
+PAX9,0.155,0.07,1.1,0.055,0.16
+PRDM1,0.255,33.89,7.5,8.065,0.79
+RARB,0.125,9.755,14.765,36.265,2.48
+REL,0.91,1.47,2.805,3.635,3.23
+RHOXF1,0.075,0.27,0.885,1.405,0.58
+RXRA,13.38,31.955,56.265,27.41,34.875
+RXRG,0.005,5.185,0.59,0.0,0.755
+SNAI2,0.09,0.055,0.565,0.36,0.66
+SP3,16.795,14.03,30.47,22.055,22.605
+TCF3,136.215,124.305,134.515,121.675,163.045
+TEAD3,19.265,15.565,27.705,25.44,35.495
+TFAP2A,0.01,0.19,2.715,0.39,0.52
+ZNF354C,2.225,2.455,4.71,4.635,4.235

analysis/GRO_seq_TFSEE/cluster_3_tfs.csv

+symbol,ES_D0,ES_D2,ES_D5,ES_D7,ES_D10
+ATF4,212.425,195.03,196.87,163.705,170.855
+BACH1,10.78,10.375,12.685,15.295,11.275
+CENPB,20.49,15.53,20.99,21.09,25.775
+CREB1,33.125,28.415,30.6,30.75,29.89
+CTCF,31.91,26.56,32.98,25.825,35.205
+E2F4,45.005,31.09,42.27,33.1,39.23
+E2F6,12.765,12.05,13.85,15.7,13.92
+E2F8,3.76,0.915,4.715,0.98,5.53
+ELK4,6.175,5.23,7.985,4.75,5.61
+FOXD3,12.855,0.57,0.0,0.0,0.0
+FOXJ3,19.505,21.48,34.235,47.38,24.415
+FOXK1,2.245,7.215,8.445,6.16,7.32
+GABPA,7.11,9.695,9.135,7.24,7.335
+GLI2,17.815,4.495,1.7,0.37,1.075
+HINFP,17.6,17.74,20.445,22.71,16.795
+IRF2,6.345,5.31,6.055,8.94,6.925
+KLF1,0.32,0.805,1.18,0.59,0.45
+KLF16,17.695,18.915,10.375,6.245,6.515
+MAFG,14.79,14.55,9.585,13.625,12.465
+NR2C2,11.36,11.285,12.59,10.985,11.54
+NRL,0.635,1.2,0.86,0.67,1.13
+OTX2,16.925,441.385,30.42,3.66,1.185
+PLAG1,3.42,3.9,4.71,6.5,4.775
+RARG,13.71,12.405,9.065,4.305,2.855
+REST,14.235,18.47,22.54,21.62,17.925
+SP1,25.235,42.015,35.205,28.575,32.855
+SP2,6.75,6.92,10.8,8.075,12.81
+SP4,3.915,1.865,3.535,3.225,3.745
+SP8,1.075,2.045,0.515,0.295,0.05
+TCF4,21.4,12.385,19.12,26.95,17.01
+TFAP4,17.345,11.925,23.92,8.635,8.93
+ZIC3,27.06,95.46,4.98,0.695,0.085
+ZNF143,24.635,31.6,23.82,23.235,25.555
+ZNF263,11.53,10.735,14.55,12.815,15.215

analysis/GRO_seq_TFSEE/cluster_4_tfs.csv

+symbol,ES_D0,ES_D2,ES_D5,ES_D7,ES_D10
+ARNTL,3.715,2.245,0.885,3.17,3.92
+CEBPA,0.57,0.12,0.945,1.765,1.11
+CREB3,14.265,14.2,12.605,25.885,25.805
+CREB3L1,7.775,3.35,9.99,18.75,10.01
+EGR1,2.3,1.69,1.2,7.685,6.465
+EHF,0.0,0.0,0.035,16.115,6.33
+ELF1,6.8,11.92,9.41,29.9,29.37
+ELF5,0.025,0.0,0.095,1.025,2.15
+FOS,3.505,0.6,0.26,2.665,13.285
+FOXP1,9.56,5.68,48.0,80.06,80.08
+GLIS2,6.2,4.785,7.855,13.145,10.66
+INSM1,0.1,0.02,0.6,6.33,30.37
+IRF1,2.89,2.39,0.305,3.11,2.56
+IRF8,0.3,0.1,0.065,1.21,1.105
+JUN,23.51,2.545,0.325,23.695,12.375
+JUNB,4.71,3.265,1.765,2.72,10.6
+KLF4,2.385,0.28,0.21,2.195,0.88
+KLF5,2.025,21.66,6.495,23.005,47.25
+MAFB,1.2,0.145,2.175,3.315,27.81
+MAFF,1.275,1.61,1.03,4.37,4.7
+MECOM,0.12,0.365,3.31,67.455,27.875
+MITF,0.38,0.22,0.275,10.9,6.08
+NFE2,0.915,0.94,2.225,3.78,6.93
+NR2F1,0.0,0.0,0.26,82.77,53.655
+ONECUT2,0.245,0.56,0.21,10.165,30.1
+ONECUT3,0.005,0.0,0.02,0.065,26.755
+PITX1,0.025,0.085,3.805,15.47,3.355
+PPARG,0.07,0.215,1.295,1.865,2.08
+RUNX1,0.195,0.195,0.08,2.16,4.48
+STAT1,16.145,33.79,19.645,19.545,145.47
+STAT2,14.685,26.38,24.935,48.685,37.59
+STAT4,0.14,2.52,0.225,0.25,8.285
+ZBTB7C,0.065,0.44,0.07,1.75,0.605
+ZFX,5.035,5.13,5.505,9.14,11.425

analysis/GRO_seq_TFSEE/clustering_tfs.csv

+,ES_D0,ES_D2,ES_D5,ES_D7,ES_D10,cluster
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+ARNTL,1.43844896065,0.526692185861,-0.955346518514,0.234433278181,0.609255929363,3
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+BACH1,1.76355297456,1.45203215811,1.3401416389,1.00655861377,-0.763419237407,2
+CEBPA,0.86625282574,-0.820644249064,0.571220397017,1.00317776452,0.55720839998,3
+CEBPB,0.210109225919,-0.127176936493,-0.580396367673,-0.826459696747,-0.750630557991,0
+CEBPD,0.210545644703,0.00987813393573,-0.955346518514,-0.826459696747,-0.499809844659,0
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+CEBPG,0.0902638363663,0.0788920091117,-0.18159976155,-0.527987724308,-0.763419237407,0
+CENPB,1.71020800903,0.21023334164,1.44240336247,-0.826459696747,0.143069731692,2
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+GABPA,0.565646243636,0.945576710579,0.358822292576,-0.617935301939,-0.763419237407,2
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