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analysis/GRO_seq_TFSEE/cluster_2_tfs.csv 0 → 100644
View file @ 05c6cfd0
symbol,ES_D0,ES_D2,ES_D5,ES_D7,ES_D10
DMBX1,0.01,0.07,0.485,0.0,0.045
ELF4,0.89,0.73,2.49,0.68,3.03
HIC2,8.515,14.585,17.16,15.31,16.66
ID4,1.555,1.32,84.935,8.975,47.94
KLF12,3.72,4.185,8.88,8.085,9.125
MAF,0.595,0.41,5.81,9.175,4.865
MZF1,8.885,12.365,17.5,26.0,23.355
NFE2L2,18.59,23.265,27.355,42.5,29.845
NKX2-8,0.0,0.0,2.84,0.0,0.01
OTX1,0.28,1.395,6.275,0.635,0.33
PAX1,0.005,0.005,3.895,1.11,0.035
PAX9,0.155,0.07,1.1,0.055,0.16
PRDM1,0.255,33.89,7.5,8.065,0.79
RARB,0.125,9.755,14.765,36.265,2.48
REL,0.91,1.47,2.805,3.635,3.23
RHOXF1,0.075,0.27,0.885,1.405,0.58
RXRA,13.38,31.955,56.265,27.41,34.875
RXRG,0.005,5.185,0.59,0.0,0.755
SNAI2,0.09,0.055,0.565,0.36,0.66
SP3,16.795,14.03,30.47,22.055,22.605
TCF3,136.215,124.305,134.515,121.675,163.045
TEAD3,19.265,15.565,27.705,25.44,35.495
TFAP2A,0.01,0.19,2.715,0.39,0.52
ZNF354C,2.225,2.455,4.71,4.635,4.235
analysis/GRO_seq_TFSEE/cluster_3_enhancers.csv 0 → 100644
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analysis/GRO_seq_TFSEE/cluster_3_enhancers_locations.bed 0 → 100644
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analysis/GRO_seq_TFSEE/cluster_3_genes.txt 0 → 100644
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analysis/GRO_seq_TFSEE/cluster_3_tfs.csv 0 → 100644
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symbol,ES_D0,ES_D2,ES_D5,ES_D7,ES_D10
ATF4,212.425,195.03,196.87,163.705,170.855
BACH1,10.78,10.375,12.685,15.295,11.275
CENPB,20.49,15.53,20.99,21.09,25.775
CREB1,33.125,28.415,30.6,30.75,29.89
CTCF,31.91,26.56,32.98,25.825,35.205
E2F4,45.005,31.09,42.27,33.1,39.23
E2F6,12.765,12.05,13.85,15.7,13.92
E2F8,3.76,0.915,4.715,0.98,5.53
ELK4,6.175,5.23,7.985,4.75,5.61
FOXD3,12.855,0.57,0.0,0.0,0.0
FOXJ3,19.505,21.48,34.235,47.38,24.415
FOXK1,2.245,7.215,8.445,6.16,7.32
GABPA,7.11,9.695,9.135,7.24,7.335
GLI2,17.815,4.495,1.7,0.37,1.075
HINFP,17.6,17.74,20.445,22.71,16.795
IRF2,6.345,5.31,6.055,8.94,6.925
KLF1,0.32,0.805,1.18,0.59,0.45
KLF16,17.695,18.915,10.375,6.245,6.515
MAFG,14.79,14.55,9.585,13.625,12.465
NR2C2,11.36,11.285,12.59,10.985,11.54
NRL,0.635,1.2,0.86,0.67,1.13
OTX2,16.925,441.385,30.42,3.66,1.185
PLAG1,3.42,3.9,4.71,6.5,4.775
RARG,13.71,12.405,9.065,4.305,2.855
REST,14.235,18.47,22.54,21.62,17.925
SP1,25.235,42.015,35.205,28.575,32.855
SP2,6.75,6.92,10.8,8.075,12.81
SP4,3.915,1.865,3.535,3.225,3.745
SP8,1.075,2.045,0.515,0.295,0.05
TCF4,21.4,12.385,19.12,26.95,17.01
TFAP4,17.345,11.925,23.92,8.635,8.93
ZIC3,27.06,95.46,4.98,0.695,0.085
ZNF143,24.635,31.6,23.82,23.235,25.555
ZNF263,11.53,10.735,14.55,12.815,15.215
analysis/GRO_seq_TFSEE/cluster_4_enhancers.csv 0 → 100644
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analysis/GRO_seq_TFSEE/cluster_4_enhancers_locations.bed 0 → 100644
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analysis/GRO_seq_TFSEE/cluster_4_genes.txt 0 → 100644
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analysis/GRO_seq_TFSEE/cluster_4_tfs.csv 0 → 100644
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symbol,ES_D0,ES_D2,ES_D5,ES_D7,ES_D10
ARNTL,3.715,2.245,0.885,3.17,3.92
CEBPA,0.57,0.12,0.945,1.765,1.11
CREB3,14.265,14.2,12.605,25.885,25.805
CREB3L1,7.775,3.35,9.99,18.75,10.01
EGR1,2.3,1.69,1.2,7.685,6.465
EHF,0.0,0.0,0.035,16.115,6.33
ELF1,6.8,11.92,9.41,29.9,29.37
ELF5,0.025,0.0,0.095,1.025,2.15
FOS,3.505,0.6,0.26,2.665,13.285
FOXP1,9.56,5.68,48.0,80.06,80.08
GLIS2,6.2,4.785,7.855,13.145,10.66
INSM1,0.1,0.02,0.6,6.33,30.37
IRF1,2.89,2.39,0.305,3.11,2.56
IRF8,0.3,0.1,0.065,1.21,1.105
JUN,23.51,2.545,0.325,23.695,12.375
JUNB,4.71,3.265,1.765,2.72,10.6
KLF4,2.385,0.28,0.21,2.195,0.88
KLF5,2.025,21.66,6.495,23.005,47.25
MAFB,1.2,0.145,2.175,3.315,27.81
MAFF,1.275,1.61,1.03,4.37,4.7
MECOM,0.12,0.365,3.31,67.455,27.875
MITF,0.38,0.22,0.275,10.9,6.08
NFE2,0.915,0.94,2.225,3.78,6.93
NR2F1,0.0,0.0,0.26,82.77,53.655
ONECUT2,0.245,0.56,0.21,10.165,30.1
ONECUT3,0.005,0.0,0.02,0.065,26.755
PITX1,0.025,0.085,3.805,15.47,3.355
PPARG,0.07,0.215,1.295,1.865,2.08
RUNX1,0.195,0.195,0.08,2.16,4.48
STAT1,16.145,33.79,19.645,19.545,145.47
STAT2,14.685,26.38,24.935,48.685,37.59
STAT4,0.14,2.52,0.225,0.25,8.285
ZBTB7C,0.065,0.44,0.07,1.75,0.605
ZFX,5.035,5.13,5.505,9.14,11.425
analysis/GRO_seq_TFSEE/clustering_tfs.csv 0 → 100644
View file @ 05c6cfd0
,ES_D0,ES_D2,ES_D5,ES_D7,ES_D10,cluster
AR,0.572016047597,-0.820644249064,-0.282479909509,-0.599484897101,-0.561286507377,0
ARNTL,1.43844896065,0.526692185861,-0.955346518514,0.234433278181,0.609255929363,3
ATF4,-0.128229266931,0.771384267987,0.889629220468,-0.570708341734,-0.763419237407,2
BACH1,1.76355297456,1.45203215811,1.3401416389,1.00655861377,-0.763419237407,2
CEBPA,0.86625282574,-0.820644249064,0.571220397017,1.00317776452,0.55720839998,3
CEBPB,0.210109225919,-0.127176936493,-0.580396367673,-0.826459696747,-0.750630557991,0
CEBPD,0.210545644703,0.00987813393573,-0.955346518514,-0.826459696747,-0.499809844659,0
CEBPE,-0.831203544052,-0.820644249064,-0.955346518514,-0.826459696747,-0.763419237407,0
CEBPG,0.0902638363663,0.0788920091117,-0.18159976155,-0.527987724308,-0.763419237407,0
CENPB,1.71020800903,0.21023334164,1.44240336247,-0.826459696747,0.143069731692,2
CREB1,1.32311147014,0.795108852606,0.66418182297,-0.252826947829,-0.763419237407,2
CREB3,0.347928730664,0.532467400984,-0.955346518514,1.60255994632,1.18483389894,3
CREB3L1,0.670981944029,-0.820644249064,0.640984388356,1.47540706947,0.107089472761,3
CTCF,0.881100806273,0.62463639338,0.901144241981,-0.826459696747,0.162886087879,2
DDIT3,-0.831203544052,0.779148451969,-0.356059344411,0.378473791618,-0.578266152953,0
DMBX1,-0.831203544052,-0.820644249064,1.53315994032,-0.826459696747,-0.763419237407,1
E2F4,0.686007108025,-0.0349633183543,0.507351479767,-0.826459696747,-0.530269445639,2
E2F6,1.46351972449,1.02232165723,0.928910532797,0.266251882512,-0.763419237407,2
E2F8,1.49279432858,-0.197019889744,0.723721762435,-0.826459696747,0.907900185462,2
EGR1,1.43770170702,0.396705129303,-0.955346518514,2.46049955426,2.19696217147,3
EGR2,-0.831203544052,-0.820644249064,-0.955346518514,0.951339729967,-0.763419237407,0
EGR3,-0.831203544052,-0.820644249064,-0.955346518514,0.0480299956057,-0.249712792424,0
EGR4,-0.831203544052,-0.820644249064,-0.955346518514,0.0494512752097,-0.763419237407,0
EHF,-0.831203544052,-0.820644249064,-0.955346518514,0.806284326399,0.998598392005,3
ELF1,-0.831203544052,-0.0282116640913,-0.744081576418,0.853893460563,0.986363127414,3
ELF3,-0.831203544052,-0.638711161513,-0.842476724811,0.750366530442,-0.0896149713833,0
ELF4,0.645178842317,-0.000427788120375,0.736234922767,-0.826459696747,0.886010205068,1
ELF5,-0.831203544052,-0.820644249064,-0.955346518514,0.969893831628,1.54703018579,3
ELK4,1.22689248642,0.600154136127,0.899149911524,-0.826459696747,-0.629155864639,2
ESR1,-0.831203544052,-0.820644249064,-0.955346518514,-0.826459696747,-0.763419237407,0
ESR2,-0.831203544052,-0.820644249064,-0.955346518514,-0.734256870285,0.738125636296,0
FIGLA,-0.831203544052,-0.820644249064,-0.955346518514,-0.826459696747,-0.763419237407,0
FOS,1.1182705897,-0.202710621966,-0.955346518514,0.143275958374,1.33344995274,3
FOSL2,-0.430224618332,-0.820644249064,-0.906897453893,0.956915779117,0.10390867019,0
FOXC2,-0.831203544052,-0.820644249064,-0.955346518514,-0.826459696747,-0.763419237407,0
FOXD3,3.56676798797,2.74503498134,-0.955346518514,-0.826459696747,-0.763419237407,2
FOXJ3,0.160197528421,0.892009602361,2.51213970212,3.1280983816,-0.763419237407,2
FOXK1,-0.831203544052,5.62366290652,4.4251306484,0.666792163315,1.24890927054,2
FOXP1,0.107430363159,-0.820644249064,2.66443753433,3.73095858153,3.79534453077,3
GABPA,0.565646243636,0.945576710579,0.358822292576,-0.617935301939,-0.763419237407,2
GCM2,-0.831203544052,-0.820644249064,-0.955346518514,-0.826459696747,-0.763419237407,0
GFI1B,-0.831203544052,-0.820644249064,-0.955346518514,-0.826459696747,-0.763419237407,0
GLI2,1.60853347262,0.8177576729,0.0857049073638,-0.826459696747,-0.140411784108,2
GLIS2,0.719811476962,-0.820644249064,0.609984073152,1.76865563409,0.111869798906,3
GSC,-0.831203544052,1.33813143984,-0.171221212023,-0.826459696747,-0.763419237407,0
GSC2,-0.831203544052,-0.820644249064,-0.955346518514,-0.826459696747,-0.763419237407,0
HIC1,-0.831203544052,-0.820644249064,-0.955346518514,1.88647195261,-0.763419237407,0
HIC2,-0.831203544052,0.773630688968,1.07363997237,-0.477988723118,-0.505046929662,1
HINFP,1.63013720849,1.7934546042,1.66414186815,1.05351941926,-0.763419237407,2
ID4,-0.588674445025,-0.820644249064,1.47425293697,0.0436221898082,1.72678981973,1
INSM1,-0.831203544052,-0.820644249064,0.0104560813663,0.872312396347,1.82809151223,3
IRF1,3.1134183136,2.83451415432,-0.955346518514,2.42374925356,1.97776928403,3
IRF2,1.48795376922,0.40914511145,0.151992124811,0.432237819351,-0.763419237407,2
IRF8,-0.831203544052,-0.820644249064,-0.955346518514,0.475724633067,0.973020876937,3
JUN,1.49267952178,0.167442366712,-0.955346518514,0.828173309552,0.788756791907,3
JUNB,1.37140035939,0.342461940729,-0.948311441067,-0.826459696747,1.3366074939,3
KLF1,-0.831203544052,1.99908301411,2.17555171415,0.0500004906673,-0.763419237407,2
KLF12,-0.831203544052,-0.793287265588,1.60941746376,-0.330769767438,-0.148523878264,1
KLF14,-0.831203544052,-0.820644249064,-0.955346518514,-0.826459696747,-0.763419237407,0
KLF16,2.00504098097,1.93762021649,0.798167171229,-0.669919225884,-0.763419237407,2
KLF4,2.4767204621,-0.820644249064,-0.955346518514,1.40534725569,0.298405676749,3
KLF5,-0.831203544052,1.91839584514,0.105604380741,1.72298309124,3.09936322446,3
MAF,-0.27713128163,-0.820644249064,0.88750664286,1.14292425782,0.663016902096,1
MAFB,0.162505006883,-0.820644249064,-0.024682762782,0.198382724809,1.44543839765,3
MAFF,0.933922999206,0.893545473302,-0.955346518514,1.6749360596,2.03732208042,3
MAFG,1.65463539038,1.86803053164,-0.239732287833,-0.023692892896,-0.763419237407,2
MAFK,1.27759637254,-0.735410542487,-0.955346518514,-0.545117906742,0.319945812562,0
MECOM,-0.831203544052,-0.820644249064,0.842137622249,3.31476987871,2.55268035989,3
MITF,-0.831203544052,-0.820644249064,-0.955346518514,1.25712028692,1.08765626935,3
MLX,-0.39860903808,-0.352312943782,-0.712237006139,-0.826459696747,-0.691220547486,0
MTF1,-0.109049273701,-0.294356565925,-0.0519983655507,-0.22471788155,-0.763419237407,0
MZF1,-0.831203544052,-0.177906355619,0.27090903732,0.70989778546,0.254683787546,1
NFE2,-0.457885250441,-0.820644249064,-0.0411450252305,0.29631698905,1.3760005188,3
NFE2L2,-0.831203544052,0.478728873059,0.618376855418,1.59138862747,-0.641509117251,1
NFIC,-0.147380548433,0.143199397263,-0.157693908629,-0.826459696747,-0.12347141042,0
NFIX,-0.831203544052,-0.820644249064,-0.955346518514,-0.826459696747,-0.763419237407,0
NKX2-3,-0.831203544052,-0.820644249064,-0.0294886136988,-0.826459696747,-0.763419237407,0
NKX2-8,-0.831203544052,-0.820644249064,0.847445712709,-0.826459696747,-0.763419237407,1
NR1H3,0.344504992736,0.211240222664,-0.1645435805,-0.509326935122,-0.763419237407,0
NR2C2,2.0938567538,1.59523719675,1.60254774643,-0.487646271578,-0.763419237407,2
NR2F1,-0.831203544052,-0.820644249064,-0.955346518514,1.19334347744,1.35148238509,3
NR2F6,0.0469024459779,0.198754402448,-0.955346518514,0.848153625619,-0.308918414009,0
NR4A2,-0.831203544052,-0.820644249064,-0.955346518514,-0.0940387234165,0.828881914118,0
NRF1,-0.215972139588,-0.277553175221,0.11360987992,-0.688350530155,-0.763419237407,0
NRL,0.629557573151,0.905587783994,0.018359627253,-0.826459696747,-0.127407865953,2
ONECUT2,-0.831203544052,-0.226794741728,-0.955346518514,1.08772197115,1.51462693766,3
ONECUT3,-0.831203544052,-0.820644249064,-0.955346518514,-0.826459696747,3.64448442205,3
OTX1,-0.831203544052,0.561246152713,1.22847357896,-0.281243574422,-0.763419237407,1
OTX2,0.35011117908,1.3118364241,0.379012005155,-0.328494433893,-0.763419237407,2
PAX1,-0.831203544052,-0.820644249064,0.845048421987,0.552601683866,-0.763419237407,1
PAX5,-0.831203544052,-0.820644249064,-0.955346518514,-0.826459696747,-0.763419237407,0
PAX6,-0.831203544052,-0.440616538773,-0.955346518514,-0.826459696747,0.331624474325,0
PAX9,-0.831203544052,-0.820644249064,0.670931307875,-0.826459696747,-0.763419237407,1
PITX1,-0.831203544052,-0.820644249064,1.28173752871,2.21897666824,1.41580084299,3
PITX3,-0.831203544052,-0.820644249064,-0.955346518514,-0.826459696747,-0.763419237407,0
PLAG1,1.2235431601,1.03703066502,1.12651433504,1.16765208615,-0.763419237407,2
PPARG,-0.831203544052,-0.820644249064,0.973928678306,1.12376928597,1.67839254243,3
PRDM1,-0.831203544052,0.694266905221,0.583070550639,0.561485244082,-0.763419237407,1
RARA,-0.831203544052,-0.426337617547,-0.51914785237,0.58159477942,0.0691922118761,0
RARB,-0.831203544052,1.10038786441,0.952941964517,1.55649119295,0.203001439264,1
RARG,1.41413943991,1.18754482231,0.566077937083,-0.280872503026,-0.763419237407,2
REL,-0.831203544052,-0.141135157238,1.01523434568,0.68092708426,-0.0466431429927,1
REST,0.207565878549,0.950519091181,1.10986496985,0.197171705605,-0.763419237407,2
RFX1,0.385178024452,0.237903767304,-0.952113905556,-0.826459696747,-0.61830466648,0
RHOXF1,-0.831203544052,-0.820644249064,0.925794367404,1.09412498129,-0.142671367057,1
RUNX1,-0.831203544052,-0.820644249064,-0.955346518514,0.487728690535,0.866647552007,3
RXRA,-0.831203544052,0.208194046865,1.11256063726,-0.328341820425,-0.0618230270343,1
RXRB,-0.831203544052,0.905956796917,-0.658826595905,0.065274373862,0.477977122657,0
RXRG,-0.831203544052,0.908858186274,0.421505186322,-0.826459696747,0.941597911266,1
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