First pass at analysis of GRO-seq centered enhancers.
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- GRO_seq_TFSEE/final_full_cluster_heatmap_rna-seq.csv 156 additions, 0 deletionsGRO_seq_TFSEE/final_full_cluster_heatmap_rna-seq.csv
- GRO_seq_TFSEE/final_full_cluster_heatmap_rna-seq.png 0 additions, 0 deletionsGRO_seq_TFSEE/final_full_cluster_heatmap_rna-seq.png
- GRO_seq_TFSEE/final_full_cluster_z_score-groseq.csv 157 additions, 0 deletionsGRO_seq_TFSEE/final_full_cluster_z_score-groseq.csv
- GRO_seq_TFSEE/final_full_cluster_z_score-rnaseq.csv 157 additions, 0 deletionsGRO_seq_TFSEE/final_full_cluster_z_score-rnaseq.csv
- GRO_seq_TFSEE/final_full_cluster_z_score.csv 157 additions, 0 deletionsGRO_seq_TFSEE/final_full_cluster_z_score.csv
- GRO_seq_TFSEE/final_full_cluster_z_score_gro_rna.csv 157 additions, 0 deletionsGRO_seq_TFSEE/final_full_cluster_z_score_gro_rna.csv
- GRO_seq_TFSEE/find_the_clusters.py 33 additions, 0 deletionsGRO_seq_TFSEE/find_the_clusters.py
- GRO_seq_TFSEE/gencode.v19.annotation_protein_coding_ids.txt 20361 additions, 0 deletionsGRO_seq_TFSEE/gencode.v19.annotation_protein_coding_ids.txt
- GRO_seq_TFSEE/h3k27ac_list.csv 6 additions, 0 deletionsGRO_seq_TFSEE/h3k27ac_list.csv
- GRO_seq_TFSEE/h3k4me1_list.csv 6 additions, 0 deletionsGRO_seq_TFSEE/h3k4me1_list.csv
- GRO_seq_TFSEE/input_list.csv 6 additions, 0 deletionsGRO_seq_TFSEE/input_list.csv
- GRO_seq_TFSEE/k_means_clustering.png 0 additions, 0 deletionsGRO_seq_TFSEE/k_means_clustering.png
- GRO_seq_TFSEE/k_means_clustering_pca.png 0 additions, 0 deletionsGRO_seq_TFSEE/k_means_clustering_pca.png
- GRO_seq_TFSEE/matrix_analysis.py 640 additions, 0 deletionsGRO_seq_TFSEE/matrix_analysis.py
- GRO_seq_TFSEE/mem_awk_script.sh 31 additions, 0 deletionsGRO_seq_TFSEE/mem_awk_script.sh
- GRO_seq_TFSEE/rna.tsv 57821 additions, 0 deletionsGRO_seq_TFSEE/rna.tsv
- GRO_seq_TFSEE/rpkm.py 107 additions, 0 deletionsGRO_seq_TFSEE/rpkm.py
- GRO_seq_TFSEE/tfsee_processing.sh 20 additions, 0 deletionsGRO_seq_TFSEE/tfsee_processing.sh
- groseq_processing.sh 29 additions, 1 deletiongroseq_processing.sh
- intervene_test/ES_Histone_universe_enhancers.tsv 182335 additions, 0 deletionsintervene_test/ES_Histone_universe_enhancers.tsv
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