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Lauren McCormick
simulate-MT-44
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Lauren McCormick
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Upload README explaining purpose of code.
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Title: Microtubule simulation code for "Measurements and simulations of microtubule growth imply
strong longitudinal interactions and reveal a role for GDP on the elongating end"
Overview: These are the source codes for simulations of microtubule growth.
##############################
Programs are heirarchical:
Smtll.m
Smtl.m
simulateMT_44.f90 (creates simulateMT_44.exe)
Smtll.m runs Smtl.m, Smtl.m runs simulateMT_44.exe.
Our system runs Red Hat Enterprise Linux Server 7.6 (Maipo)
the following software is required (loaded as modules on our system)
matlab2019a
intel 15.0.0
##############################
The fortran executable can be run via command line to run a single, standalone simulation.
Use Smtl to run replicates of a certain set of parameters.
Use Smtll to run groups of Smtl objects.
For the specific commands, please see the comments in each file.
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