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Commit 7bddd132 authored by Jefferson Chen's avatar Jefferson Chen
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Update file README.md

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......@@ -138,7 +138,7 @@ The generation results are all stored within the folder **./scGPT/Generation_Res
| Tangram | 0.215512 | 0.232485 |
### Comparsion with Redeconve & Seurat
## Method Comparsion
To run the result for Redeconve, go to folder **./scGPT/Redeconve**. Run **formatting.py** before running **Redeconve.R**.
......@@ -146,6 +146,29 @@ To run the result for Redeconve, go to folder **./scGPT/Redeconve**. Run **forma
Seurat* -- Needs to be implemented
### Method Comparsion with Redeconve & Seurat (Human Breast)
**Note**: We used Human Breast dataset. The default hyperparameters is $ratio=0.8$, $k=1000$, $m=100$, $n_{genes}$ is the overlap with marker genes.
| Methods | Median | Mean |
|------------|---------|---------|
| Ours | 0.928724 | 0.869383 |
| Redeconve | \ | \ |
| Seurat | \ | \ |
| Tangram | 0.430505 | 0.437279 |
### Method Comparsion with Redeconve & Seurat (Human Lymph Node)
**Note**: We used Human Breast dataset. The default hyperparameters is $ratio=0.8$, $k=730$, $m=100$, $n_{genes}$ is the overlap with marker genes.
| Methods | Median | Mean |
|------------|---------|---------|
| Ours | 0.931290 | 0.906363 |
| Redeconve | \ | \ |
| Seurat | \ | \ |
| Tangram | 0.557360 | 0.569141 |
## Acknowledgement
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