Merge branch 'fpwork' into 'main'

Fix conda bug at the beginning of the nextflow script.

See merge request !6

workflow/main.nf

@@ -21,6 +21,7 @@ process runSource {
     publishDir "$baseDir/output", mode: 'copy'
 
     input:
+
     file inputJson from inputJsonFile
 
     output:
@@ -28,12 +29,12 @@ process runSource {
     
     shell:
     '''
-    # Enable the use of bash-specific conda commands in this shell.
-    eval "$(conda shell.bash hook)"
-
     module load python/3.8.x-anaconda
     module load openjdk/18
 
+    # Enable the use of bash-specific conda commands in this shell.
+    eval "$(conda shell.bash hook)"
+
     # Create a temporary conda environment for caper.
     conda create -y -c bioconda -c defaults -c conda-forge --name astrocyte-atac-caper python=3.8.18
     # Activate and install caper.