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Ahmed Abbas
CNN-ChIPr
Commits
f62515c0
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f62515c0
authored
1 year ago
by
Ahmed Abbas
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#!/bin/bash
#
# CREATED USING THE BIOHPC PORTAL on Wed Oct 18 2023 12:54:55 GMT-0500 (Central Daylight Time)
#
# This file is batch script used to run commands on the BioHPC cluster.
# The script is submitted to the cluster using the SLURM `sbatch` command.
# Lines starting with # are comments, and will not be run.
# Lines starting with #SBATCH specify options for the scheduler.
# Lines that do not start with # or #SBATCH are commands that will run.
# Name for the job that will be visible in the job queue and accounting tools.
#SBATCH --job-name NewJob
# Name of the SLURM partition that this job should run on.
#SBATCH -p 256GB # partition (queue)
# Number of nodes required to run this job
#SBATCH -N 1
# Memory (RAM) requirement/limit in MB.
#SBATCH --mem 252928 # Memory Requirement (MB)
# Time limit for the job in the format Days-H:M:S
# A job that reaches its time limit will be cancelled.
# Specify an accurate time limit for efficient scheduling so your job runs promptly.
#SBATCH -t 3-2:0:00
# The standard output and errors from commands will be written to these files.
# %j in the filename will be replace with the job number when it is submitted.
#SBATCH -o job_%j.out
#SBATCH -e job_%j.err
# Send an email when the job status changes, to the specfied address.
#SBATCH --mail-type ALL
#SBATCH --mail-user ahmed.abbaselmahdi@utsouthwestern.edu
module load python/3.10.x-anaconda
conda activate my_renv1
Rscript get_seq_ip_files.R
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