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HiC_prediction/get_ctcf_tads_ori_IMR90.sh

+#!/bin/bash
+#
+# CREATED USING THE BIOHPC PORTAL on Mon Jun 26 2023 21:09:37 GMT-0500 (Central Daylight Time)
+#
+# This file is batch script used to run commands on the BioHPC cluster.
+# The script is submitted to the cluster using the SLURM `sbatch` command.
+# Lines starting with # are comments, and will not be run.
+# Lines starting with #SBATCH specify options for the scheduler.
+# Lines that do not start with # or #SBATCH are commands that will run.
+
+# Name for the job that will be visible in the job queue and accounting tools.
+#SBATCH --job-name TADs_IMR90
+
+# Name of the SLURM partition that this job should run on.
+#SBATCH -p 256GB       # partition (queue)
+# Number of nodes required to run this job
+#SBATCH -N 1
+
+# Memory (RAM) requirement/limit in MB.
+#SBATCH --mem 252928      # Memory Requirement (MB)
+
+# Time limit for the job in the format Days-H:M:S
+# A job that reaches its time limit will be cancelled.
+# Specify an accurate time limit for efficient scheduling so your job runs promptly.
+#SBATCH -t 0-20:0:00
+
+# The standard output and errors from commands will be written to these files.
+# %j in the filename will be replace with the job number when it is submitted.
+#SBATCH -o TADs_IMR.out
+#SBATCH -e TADs_IMR.err
+
+# Send an email when the job status changes, to the specfied address.
+#SBATCH --mail-type ALL
+#SBATCH --mail-user ahmed.abbaselmahdi@utsouthwestern.edu
+
+module load python/3.10.x-anaconda
+conda activate my_renv1
+
+Rscript get_CTCF_ORI_TADS_IMR90.R