Add 'rlnTomoName' in the written starfile for the support of relion5

src/clash_resolver.py

@@ -162,6 +162,7 @@ class ClashResolver:
 
     def save_results(self, vol_array):
         prefix = config.prefix
+        tomoID = config.tomoID
         # save xml file
         results_xml = save_xml_one_loop(
             self.ccc_save, self.rot_save, self.coord_save, self.model_save
@@ -181,6 +182,7 @@ class ClashResolver:
         df.to_csv(self.output_path + prefix + ".csv", index=False)
         # save star file
         star = coord_to_relion(self.coord_save, self.rot_save, self.ccc_save)
+        star['rlnTomoName'] = tomoID
         starfile.write(star, self.output_path + prefix + ".star", overwrite=True)
         # plot the annotation over the tomogram
         df2 = coord_to_relion(self.coord_save, self.rot_save)

src/config.py

@@ -19,7 +19,7 @@ tomoID = split_path[-2]
 prefix = tomoID + ".test1"
 input_folder = "inputs/"
 tomogram = input_folder + tomoID + ".test1.lps25.mrc"
-black_on_white = 1 # The constrast of tomogram, 0 if the particle has white contrast (positive values)
+black_on_white = 1 # The contrast of tomogram, 0 if the particle has white contrast (positive values)
 
 templates = [input_folder + "mono-8Apx-lps30-box30-rot12-core.mrc"]
 contour_level = [0.2]