removed hard coded paths to seqprg; update GATK to 4.1.4 (ffd65068) · Commits · NGS CLIA Lab / process_scripts · GitLab

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NGS CLIA Lab
process_scripts
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ffd65068

Commit ffd65068 authored 5 years ago by

Brandi Cantarel

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removed hard coded paths to seqprg; update GATK to 4.1.4

parent 274f44a3

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Changes 7

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alignment/dnaseqalign.sh 6 additions, 1 deletion

alignment/dnaseqalign.sh
alignment/markdups.sh 7 additions, 1 deletion

alignment/markdups.sh
genect_rnaseq/geneabundance.sh 1 addition, 0 deletions

genect_rnaseq/geneabundance.sh
variants/gatkrunner.sh 1 addition, 1 deletion

variants/gatkrunner.sh
variants/itdseek.sh 2 additions, 2 deletions

variants/itdseek.sh
variants/svcalling.sh 3 additions, 2 deletions

variants/svcalling.sh
variants/uni_norm_annot.sh 3 additions, 1 deletion

variants/uni_norm_annot.sh

with 23 additions and 8 deletions

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