Commit f65dccb0 authored by Brandi Cantarel's avatar Brandi Cantarel
Browse files

correct isdocker norm_annot.sh used by pindel

parent 07dfaba5
......@@ -25,9 +25,11 @@ shift $(($OPTIND -1))
baseDir="`dirname \"$0\"`"
if [[ -z $isdocker ]]
source /etc/profile.d/modules.sh
module load bedtools/2.26.0 samtools/gcc/1.8 bcftools/gcc/1.8 snpeff/4.3q
then
source /etc/profile.d/modules.sh
module load bedtools/2.26.0 samtools/gcc/1.8 bcftools/gcc/1.8 snpeff/4.3q
fi
if [[ -a "${index_path}/genome.fa" ]]
then
reffa="${index_path}/genome.fa"
......
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