updates for tmp directory, indels, svs and remove hard links to files (e6be1c74) · Commits · NGS CLIA Lab / process_scripts · GitLab

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NGS CLIA Lab
process_scripts
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e6be1c74

Commit e6be1c74 authored 5 years ago by

Brandi Cantarel

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updates for tmp directory, indels, svs and remove hard links to files

parent e5a78c7e

No related merge requests found

Changes 6

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alignment/bamqc.sh 3 additions, 3 deletions

alignment/bamqc.sh
alignment/markdups.sh 5 additions, 3 deletions

alignment/markdups.sh
variants/gatkrunner.sh 3 additions, 3 deletions

variants/gatkrunner.sh
variants/parse_pindel.pl 4 additions, 1 deletion

variants/parse_pindel.pl
variants/svcalling.sh 12 additions, 5 deletions

variants/svcalling.sh
variants/unionvcf.pl 1 addition, 1 deletion

variants/unionvcf.pl

with 28 additions and 16 deletions

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