Skip to content
Snippets Groups Projects
Commit b7202191 authored by Brandi Cantarel's avatar Brandi Cantarel
Browse files

add baseDir to genect_rnaseq/geneabundance.sh

parent a608fcea
No related merge requests found
Hide whitespace changes
Inline Side-by-side
genect_rnaseq/geneabundance.sh
+ 1
− 1
View file @ b7202191
...@@ -41,7 +41,7 @@ then ...@@ -41,7 +41,7 @@ then
fi fi
source /etc/profile.d/modules.sh source /etc/profile.d/modules.sh
module load subread/1.6.1 module load subread/1.6.1
baseDir="`dirname \"$0\"`"
export PATH=/project/shared/bicf_workflow_ref/seqprg/bin:$PATH export PATH=/project/shared/bicf_workflow_ref/seqprg/bin:$PATH
featureCounts -s $stranded -M --fraction -J --ignoreDup -T $NPROC -p -g gene_name -a ${gtf} -o ${pair_id}.cts ${sbam} featureCounts -s $stranded -M --fraction -J --ignoreDup -T $NPROC -p -g gene_name -a ${gtf} -o ${pair_id}.cts ${sbam}
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment