upload alignment processes (9e9fa0e7) · Commits · NGS CLIA Lab / process_scripts · GitLab

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NGS CLIA Lab
process_scripts
Commits
9e9fa0e7

Commit 9e9fa0e7 authored 7 years ago by

Brandi Cantarel

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upload alignment processes

parent 3090fd6a

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Changes 13

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alignment/bamqc.sh 55 additions, 5 deletions

alignment/bamqc.sh
alignment/bamqc_dna.pl 0 additions, 0 deletions

alignment/bamqc_dna.pl
alignment/bamqc_rna.pl 0 additions, 0 deletions

alignment/bamqc_rna.pl
alignment/dnaseqalign.sh 65 additions, 0 deletions

alignment/dnaseqalign.sh
alignment/hisat.sh 0 additions, 52 deletions

alignment/hisat.sh
alignment/rnaseqalign.sh 68 additions, 0 deletions

alignment/rnaseqalign.sh
alignment/star_aligner.sh 0 additions, 18 deletions

alignment/star_aligner.sh
variants/cnvkit.sh 0 additions, 0 deletions

variants/cnvkit.sh
variants/gatkrunner.sh 61 additions, 0 deletions

variants/gatkrunner.sh
variants/lca.R 0 additions, 0 deletions

variants/lca.R
variants/parse_svresults.pl 0 additions, 0 deletions

variants/parse_svresults.pl
variants/transvar2bed.pl 0 additions, 0 deletions

variants/transvar2bed.pl
variants/uniform_integrated_vcf.pl 0 additions, 0 deletions

variants/uniform_integrated_vcf.pl

with 249 additions and 75 deletions

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