update cnv with vcf (9c238995) · Commits · NGS CLIA Lab / process_scripts · GitLab

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NGS CLIA Lab
process_scripts
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9c238995

Commit 9c238995 authored 5 years ago by

Brandi Cantarel

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update cnv with vcf

parent 68aab844

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Changes 10

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alignment/dnaseqalign.sh 10 additions, 12 deletions

alignment/dnaseqalign.sh
variants/cnvkit.sh 13 additions, 5 deletions

variants/cnvkit.sh
variants/filter_cnvkit.pl 6 additions, 10 deletions

variants/filter_cnvkit.pl
variants/formatVcfCNV.pl 78 additions, 0 deletions

variants/formatVcfCNV.pl
variants/gatkrunner.sh 3 additions, 3 deletions

variants/gatkrunner.sh
variants/germline_vc.sh 1 addition, 1 deletion

variants/germline_vc.sh
variants/itdseek.sh 1 addition, 1 deletion

variants/itdseek.sh
variants/norm_annot.sh 1 addition, 11 deletions

variants/norm_annot.sh
variants/somatic_vc.sh 1 addition, 1 deletion

variants/somatic_vc.sh
variants/svcalling.sh 1 addition, 1 deletion

variants/svcalling.sh

with 115 additions and 45 deletions

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