Commit 68aac6f3 authored by Brandi Cantarel's avatar Brandi Cantarel
Browse files

update biohpc var

parent 900cb6c3
......@@ -83,12 +83,15 @@ then
bgzip ${pair_id}.sam.vcf
elif [[ $algo == 'fb' ]]
then
paropt="--delay 1 --jobs 0 --memfree 2G"
if [[ -z $isdocker ]]
then
module load freebayes/gcc/1.2.0 parallel/20150122
paropt="--delay 2 -j $NPROC"
else
paropt="--delay 1 --jobs 0 --memfree 2G"
fi
if [[ -n $biohpc ]]
then
paropt="--delay 2 -j $NPROC"
fi
bamlist=''
for i in *.bam; do
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment