Merge branch 'master' of git.biohpc.swmed.edu:ngsclialab/process_scripts (529fdbfc) · Commits · NGS CLIA Lab / process_scripts · GitLab

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NGS CLIA Lab
process_scripts
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529fdbfc

Commit 529fdbfc authored 4 years ago by

Brandi Cantarel

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Merge branch 'master' of git.biohpc.swmed.edu:ngsclialab/process_scripts

parents 5332c4bf a871536b

No related merge requests found

Changes 8

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alignment/bamqc.sh 23 additions, 8 deletions

alignment/bamqc.sh
alignment/sequenceqc_dna.pl 141 additions, 0 deletions

alignment/sequenceqc_dna.pl
alignment/sequenceqc_rna.pl 78 additions, 0 deletions

alignment/sequenceqc_rna.pl
alignment/starfusion.sh 5 additions, 8 deletions

alignment/starfusion.sh
variants/filter_cnvkit.pl 0 additions, 1 deletion

variants/filter_cnvkit.pl
variants/gatkrunner.sh 3 additions, 24 deletions

variants/gatkrunner.sh
variants/germline_vc.sh 12 additions, 8 deletions

variants/germline_vc.sh
variants/somatic_vc.sh 17 additions, 2 deletions

variants/somatic_vc.sh

with 279 additions and 51 deletions

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